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    SART3 spliceosome associated factor 3, U4/U6 recycling protein [ Equus caballus (horse) ]

    Gene ID: 100066913, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SART3provided by VGNC
    Official Full Name
    spliceosome associated factor 3, U4/U6 recycling proteinprovided by VGNC
    Primary source
    VGNC:VGNC:57213
    See related
    Ensembl:ENSECAG00000000314
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See SART3 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 8 NC_009151.3 (14550402..14585200)

    Chromosome 8 - NC_009151.3Genomic Context describing neighboring genes Neighboring gene transmembrane protein 119 Neighboring gene iron-sulfur cluster assembly enzyme Neighboring gene FIC domain protein adenylyltransferase Neighboring gene uncharacterized LOC111774538

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009151.3 Chromosome 8 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ASAP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    squamous cell carcinoma antigen recognized by T-cells 3
    Names
    squamous cell carcinoma antigen recognised by T cells 3
    squamous cell carcinoma antigen recognized by T cells 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009151.3 Reference EquCab3.0 Primary Assembly

      Range
      14550402..14585200
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005612507.3 → XP_005612564.2  squamous cell carcinoma antigen recognized by T-cells 3 isoform X1

      UniProtKB/TrEMBL
      A0A5F5PSU0
      Related
      ENSECAP00000051548.1, ENSECAT00000073062.2
      Conserved Domains (4) summary
      cd12391
      Location:724 → 797
      RRM1_SART3; RNA recognition motif 1 in squamous cell carcinoma antigen recognized by T-cells 3 (SART3) and similar proteins
      cd12392
      Location:818 → 898
      RRM2_SART3; RNA recognition motif 2 in squamous cell carcinoma antigen recognized by T-cells 3 (SART3) and similar proteins
      pfam16605
      Location:896 → 952
      LSM_int_assoc; LSM-interacting associated unstructured
      cl26993
      Location:101 → 479
      Suf; Suppressor of forked protein (Suf)

    2. XM_001916593.5 → XP_001916628.2  squamous cell carcinoma antigen recognized by T-cells 3 isoform X2

      UniProtKB/TrEMBL
      A0A5F5PSU0, F7C5Y4
      Related
      ENSECAP00000000465.2, ENSECAT00000000594.3
      Conserved Domains (4) summary
      cd12391
      Location:706 → 779
      RRM1_SART3; RNA recognition motif 1 in squamous cell carcinoma antigen recognized by T-cells 3 (SART3) and similar proteins
      cd12392
      Location:800 → 880
      RRM2_SART3; RNA recognition motif 2 in squamous cell carcinoma antigen recognized by T-cells 3 (SART3) and similar proteins
      pfam16605
      Location:878 → 934
      LSM_int_assoc; LSM-interacting associated unstructured
      cl26993
      Location:101 → 461
      Suf; Suppressor of forked protein (Suf)
    Nucleotide Protein
    Heading Accession and Version

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