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    USP13 ubiquitin specific peptidase 13 [ Equus caballus (horse) ]

    Gene ID: 100065844, updated on 17-Aug-2024

    Summary

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    Official Symbol
    USP13provided by VGNC
    Official Full Name
    ubiquitin specific peptidase 13provided by VGNC
    Primary source
    VGNC:VGNC:52454
    See related
    Ensembl:ENSECAG00000004152
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See USP13 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 19 NC_009162.3 (21068815..21175106)

    Chromosome 19 - NC_009162.3Genomic Context describing neighboring genes Neighboring gene 60S acidic ribosomal protein P0 pseudogene Neighboring gene NADH:ubiquinone oxidoreductase subunit B5 Neighboring gene microRNA mir-9178 Neighboring gene peroxisomal biogenesis factor 5 like Neighboring gene uncharacterized LOC111769029 Neighboring gene uncharacterized LOC102150894

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009162.3 Chromosome 19 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin carboxyl-terminal hydrolase 13
    Names
    ubiquitin specific peptidase 13 (isopeptidase T-3)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009162.3 Reference EquCab3.0 Primary Assembly

      Range
      21068815..21175106
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023623342.1 → XP_023479110.1  ubiquitin carboxyl-terminal hydrolase 13

      UniProtKB/TrEMBL
      A0A9L0RCU8, F7AWD8
      Related
      ENSECAP00000004375.2, ENSECAT00000006202.4
      Conserved Domains (4) summary
      cd02658
      Location:337 → 859
      Peptidase_C19B; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      cd14384
      Location:652 → 700
      UBA1_UBP13; UBA1 domain found in ubiquitin carboxyl-terminal hydrolase 13 (UBP13)
      cd14386
      Location:728 → 769
      UBA2_UBP5; UBA2 domain found in ubiquitin carboxyl-terminal hydrolase 5 (UBP5)
      pfam02148
      Location:211 → 284
      zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
    Nucleotide Protein
    Heading Accession and Version

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