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    BCL11A BCL11 transcription factor A [ Equus caballus (horse) ]

    Gene ID: 100065364, updated on 17-Aug-2024

    Summary

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    Official Symbol
    BCL11Aprovided by VGNC
    Official Full Name
    BCL11 transcription factor Aprovided by VGNC
    Primary source
    VGNC:VGNC:58914
    See related
    Ensembl:ENSECAG00000008094
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See BCL11A in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 15 NC_009158.3 (41506206..41603767)

    Chromosome 15 - NC_009158.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111768094 Neighboring gene poly(A) polymerase gamma Neighboring gene uncharacterized LOC111768095 Neighboring gene uncharacterized LOC111768096

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009158.3 Chromosome 15 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of dendrite development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    B-cell lymphoma/leukemia 11A
    Names
    B cell CLL/lymphoma 11A
    BAF chromatin remodeling complex subunit BCL11A
    BCL11A, BAF complex component

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009158.3 Reference EquCab3.0 Primary Assembly

      Range
      41506206..41603767
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023619062.1 → XP_023474830.1  B-cell lymphoma/leukemia 11A isoform X3

      UniProtKB/TrEMBL
      A0A3Q2I0A8
      Related
      ENSECAP00000041000.3, ENSECAT00000038831.3
      Conserved Domains (3) summary
      sd00017
      Location:710 → 730
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:709 → 730
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:357 → 382
      zf-H2C2_2; Zinc-finger double domain

    2. XM_023619061.1 → XP_023474829.1  B-cell lymphoma/leukemia 11A isoform X2

      UniProtKB/TrEMBL
      A0A3Q2KTI3
      Related
      ENSECAP00000027252.3, ENSECAT00000041421.3
      Conserved Domains (4) summary
      sd00017
      Location:379 → 399
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:744 → 764
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:743 → 764
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:391 → 416
      zf-H2C2_2; Zinc-finger double domain

    3. XM_023619060.1 → XP_023474828.1  B-cell lymphoma/leukemia 11A isoform X1

      UniProtKB/TrEMBL
      A0A9L0TEZ6
      Related
      ENSECAP00000085653.1, ENSECAT00000132103.1
      Conserved Domains (3) summary
      sd00017
      Location:744 → 764
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:743 → 764
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:391 → 416
      zf-H2C2_2; Zinc-finger double domain

    4. XM_005599967.3 → XP_005600024.3  B-cell lymphoma/leukemia 11A isoform X4

      Conserved Domains (3) summary
      sd00017
      Location:379 → 399
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:378 → 399
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:391 → 416
      zf-H2C2_2; Zinc-finger double domain

    5. XM_023619063.1 → XP_023474831.1  B-cell lymphoma/leukemia 11A isoform X5

    Nucleotide Protein
    Heading Accession and Version

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