U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    TAF6L TATA-box binding protein associated factor 6 like [ Equus caballus (horse) ]

    Gene ID: 100063916, updated on 15-Aug-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    TAF6L
    Gene description
    TATA-box binding protein associated factor 6 like
    See related
    Ensembl:ENSECAG00000021482
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See TAF6L in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 12 NC_009155.3 (26558973..26570137)

    Chromosome 12 - NC_009155.3Genomic Context describing neighboring genes Neighboring gene zinc finger and BTB domain containing 3 Neighboring gene RNA polymerase II subunit G Neighboring gene transmembrane protein 179B Neighboring gene transmembrane protein 223 Neighboring gene nuclear RNA export factor 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_009155.3 Chromosome 12 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II general transcription initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA polymerase II preinitiation complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription initiation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SAGA complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of SLIK (SAGA-like) complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription factor TFIID complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L
    Names
    TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009155.3 Reference EquCab3.0 Primary Assembly

      Range
      26558973..26570137
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005598252.3 → XP_005598309.3  TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L

      UniProtKB/TrEMBL
      A0A9L0RU35, A0A9L0SBG3
      Related
      ENSECAP00000067335.1, ENSECAT00000130319.1
      Conserved Domains (3) summary
      cd08050
      Location:13 → 322
      TAF6; TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
      cl21461
      Location:316 → 374
      Globin_like; Globin-like proteins
      cl27975
      Location:457 → 607
      EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)

    2. XM_023654242.1 → XP_023510010.1  TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L

      UniProtKB/TrEMBL
      A0A9L0RU35, A0A9L0SBG3
      Related
      ENSECAP00000071360.1, ENSECAT00000127707.1
      Conserved Domains (3) summary
      cd08050
      Location:13 → 322
      TAF6; TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
      cl21461
      Location:316 → 374
      Globin_like; Globin-like proteins
      cl27975
      Location:457 → 607
      EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials