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    GTF2IRD1 GTF2I repeat domain containing 1 [ Equus caballus (horse) ]

    Gene ID: 100062277, updated on 17-Aug-2024

    Summary

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    Official Symbol
    GTF2IRD1provided by VGNC
    Official Full Name
    GTF2I repeat domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:18642
    See related
    Ensembl:ENSECAG00000019745
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See GTF2IRD1 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 13 NC_009156.3 (12205083..12315484)

    Chromosome 13 - NC_009156.3Genomic Context describing neighboring genes Neighboring gene CAP-Gly domain containing linker protein 2 Neighboring gene RWD domain-containing protein 1 pseudogene Neighboring gene uncharacterized LOC106781525 Neighboring gene translation initiation factor IF-2 Neighboring gene general transcription factor IIi

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009156.3 Chromosome 13 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    general transcription factor II-I repeat domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009156.3 Reference EquCab3.0 Primary Assembly

      Range
      12205083..12315484
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023655493.1 → XP_023511261.1  general transcription factor II-I repeat domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2IBK2
      Conserved Domains (1) summary
      pfam02946
      Location:787 → 859
      GTF2I; GTF2I-like repeat

    2. XM_023655489.1 → XP_023511257.1  general transcription factor II-I repeat domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2IBK2
      Conserved Domains (1) summary
      pfam02946
      Location:787 → 859
      GTF2I; GTF2I-like repeat

    3. XM_023655487.1 → XP_023511255.1  general transcription factor II-I repeat domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2IBK2
      Related
      ENSECAP00000043207.2, ENSECAT00000052138.2
      Conserved Domains (1) summary
      pfam02946
      Location:787 → 859
      GTF2I; GTF2I-like repeat

    4. XM_023655491.1 → XP_023511259.1  general transcription factor II-I repeat domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A3Q2IBK2
      Related
      ENSECAP00000087817.1, ENSECAT00000108777.1
      Conserved Domains (1) summary
      pfam02946
      Location:771 → 843
      GTF2I; GTF2I-like repeat

    5. XM_023655494.1 → XP_023511262.1  general transcription factor II-I repeat domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2IBK2
      Conserved Domains (1) summary
      pfam02946
      Location:787 → 859
      GTF2I; GTF2I-like repeat

    6. XM_023655488.1 → XP_023511256.1  general transcription factor II-I repeat domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2IBK2
      Conserved Domains (1) summary
      pfam02946
      Location:787 → 859
      GTF2I; GTF2I-like repeat

    7. XM_023655490.1 → XP_023511258.1  general transcription factor II-I repeat domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2IBK2
      Conserved Domains (1) summary
      pfam02946
      Location:787 → 859
      GTF2I; GTF2I-like repeat

    8. XM_023655492.1 → XP_023511260.1  general transcription factor II-I repeat domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A3Q2IBK2
      Conserved Domains (1) summary
      pfam02946
      Location:768 → 840
      GTF2I; GTF2I-like repeat

    9. XM_023655495.1 → XP_023511263.1  general transcription factor II-I repeat domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A9L0SL08
      Conserved Domains (1) summary
      pfam02946
      Location:690 → 762
      GTF2I; GTF2I-like repeat
    Nucleotide Protein
    Heading Accession and Version

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