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    ASGR1 asialoglycoprotein receptor 1 [ Equus caballus (horse) ]

    Gene ID: 100061471, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ASGR1provided by VGNC
    Official Full Name
    asialoglycoprotein receptor 1provided by VGNC
    Primary source
    VGNC:VGNC:15580
    See related
    Ensembl:ENSECAG00000024206
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human all
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    Genomic context

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    See ASGR1 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 11 NC_009154.3 (50542012..50545619, complement)

    Chromosome 11 - NC_009154.3Genomic Context describing neighboring genes Neighboring gene C-type lectin domain family 10 member A-like Neighboring gene asialoglycoprotein receptor 2 Neighboring gene FUN14 domain-containing protein 2 pseudogene Neighboring gene baculoviral IAP repeat-containing protein 5 pseudogene Neighboring gene discs large MAGUK scaffold protein 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009154.3 Chromosome 11 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables D-mannose binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables fucose binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables signaling receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological process involved in interspecies interaction between organisms IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in external side of plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    asialoglycoprotein receptor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009154.3 Reference EquCab3.0 Primary Assembly

      Range
      50542012..50545619 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023653401.1 → XP_023509169.1  asialoglycoprotein receptor 1 isoform X1

      UniProtKB/TrEMBL
      A0A9L0RF28, F6YKE3
      Conserved Domains (2) summary
      cd03590
      Location:174 → 299
      CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
      pfam03954
      Location:52 → 164
      Lectin_N; Hepatic lectin, N-terminal domain

    2. XM_023653400.1 → XP_023509168.1  asialoglycoprotein receptor 1 isoform X1

      UniProtKB/TrEMBL
      A0A9L0RF28, F6YKE3
      Related
      ENSECAP00000060251.1, ENSECAT00000109292.1
      Conserved Domains (2) summary
      cd03590
      Location:174 → 299
      CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
      pfam03954
      Location:52 → 164
      Lectin_N; Hepatic lectin, N-terminal domain

    3. XM_001504758.4 → XP_001504808.1  asialoglycoprotein receptor 1 isoform X2

      UniProtKB/TrEMBL
      F6YKE3
      Related
      ENSECAP00000021739.4, ENSECAT00000026090.4
      Conserved Domains (2) summary
      cd03590
      Location:153 → 278
      CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
      pfam03954
      Location:18 → 143
      Lectin_N; Hepatic lectin, N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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