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    CPSF6 cleavage and polyadenylation specific factor 6 [ Equus caballus (horse) ]

    Gene ID: 100059688, updated on 17-Aug-2024

    Summary

    Official Symbol
    CPSF6provided by VGNC
    Official Full Name
    cleavage and polyadenylation specific factor 6provided by VGNC
    Primary source
    VGNC:VGNC:16837
    See related
    Ensembl:ENSECAG00000015988
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
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    Genomic context

    See CPSF6 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 6 NC_009149.3 (85339536..85370904)

    Chromosome 6 - NC_009149.3Genomic Context describing neighboring genes Neighboring gene carboxypeptidase M Neighboring gene uncharacterized LOC111774032 Neighboring gene uncharacterized LOC111774033 Neighboring gene YEATS domain containing 4 Neighboring gene lysozyme

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_009149.3 Chromosome 6 Reference EquCab3.0 Primary Assembly

    General protein information

    Preferred Names
    cleavage and polyadenylation specificity factor subunit 6
    Names
    cleavage and polyadenylation specific factor 6, 68kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009149.3 Reference EquCab3.0 Primary Assembly

      Range
      85339536..85370904
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023643981.1XP_023499749.1  cleavage and polyadenylation specificity factor subunit 6 isoform X1

      Conserved Domains (2) summary
      COG0724
      Location:9152
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12643
      Location:82158
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins
    2. XM_023643983.1XP_023499751.1  cleavage and polyadenylation specificity factor subunit 6 isoform X2

      UniProtKB/TrEMBL
      A0A3Q2HYP0
      Related
      ENSECAP00000040563.1, ENSECAT00000058418.3
      Conserved Domains (2) summary
      COG0724
      Location:9152
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12643
      Location:82158
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins
    3. XM_023643984.1XP_023499752.1  cleavage and polyadenylation specificity factor subunit 6 isoform X3

      UniProtKB/TrEMBL
      F6V9A2
      Related
      ENSECAP00000013734.3, ENSECAT00000016964.3
      Conserved Domains (1) summary
      cd12643
      Location:82158
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins
    4. XM_023643985.1XP_023499753.1  cleavage and polyadenylation specificity factor subunit 6 isoform X4

      UniProtKB/TrEMBL
      A0A9L0RAY9
      Related
      ENSECAP00000058798.1, ENSECAT00000089595.1
      Conserved Domains (1) summary
      cd12643
      Location:82158
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins
    5. XM_023643982.1XP_023499750.1  cleavage and polyadenylation specificity factor subunit 6 isoform X1

      Conserved Domains (2) summary
      COG0724
      Location:9152
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12643
      Location:82158
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins