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    ARNT aryl hydrocarbon receptor nuclear translocator [ Equus caballus (horse) ]

    Gene ID: 100059178, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ARNTprovided by VGNC
    Official Full Name
    aryl hydrocarbon receptor nuclear translocatorprovided by VGNC
    Primary source
    VGNC:VGNC:50801
    See related
    Ensembl:ENSECAG00000009602
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See ARNT in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 5 NC_009148.3 (42952359..43015084)

    Chromosome 5 - NC_009148.3Genomic Context describing neighboring genes Neighboring gene ceramide synthase 2 Neighboring gene SET domain bifurcated histone lysine methyltransferase 1 Neighboring gene uncharacterized LOC111773529 Neighboring gene cathepsin K Neighboring gene cathepsin S

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009148.3 Chromosome 5 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of aryl hydrocarbon receptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    aryl hydrocarbon receptor nuclear translocator

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009148.3 Reference EquCab3.0 Primary Assembly

      Range
      42952359..43015084
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023641233.1 → XP_023497001.1  aryl hydrocarbon receptor nuclear translocator isoform X2

      UniProtKB/TrEMBL
      A0A9L0R3Q1
      Conserved Domains (3) summary
      pfam00010
      Location:104 → 156
      HLH; Helix-loop-helix DNA-binding domain
      pfam00989
      Location:176 → 282
      PAS; PAS fold
      cl25986
      Location:375 → 475
      PAS_3; PAS fold

    2. XM_023641235.1 → XP_023497003.1  aryl hydrocarbon receptor nuclear translocator isoform X4

      UniProtKB/TrEMBL
      A0A9L0R3Q1
      Conserved Domains (4) summary
      pfam00010
      Location:89 → 141
      HLH; Helix-loop-helix DNA-binding domain
      pfam00989
      Location:161 → 267
      PAS; PAS fold
      pfam11593
      Location:527 → 733
      Med3; Mediator complex subunit 3 fungal
      cl25986
      Location:360 → 460
      PAS_3; PAS fold

    3. XM_023641236.1 → XP_023497004.1  aryl hydrocarbon receptor nuclear translocator isoform X5

      UniProtKB/TrEMBL
      A0A9L0R3Q1
      Conserved Domains (3) summary
      pfam00010
      Location:89 → 141
      HLH; Helix-loop-helix DNA-binding domain
      pfam00989
      Location:161 → 267
      PAS; PAS fold
      cl25986
      Location:360 → 460
      PAS_3; PAS fold

    4. XM_023641237.1 → XP_023497005.1  aryl hydrocarbon receptor nuclear translocator isoform X6

      UniProtKB/TrEMBL
      A0A9L0R3Q1
      Related
      ENSECAP00000075952.1, ENSECAT00000104388.1
      Conserved Domains (4) summary
      pfam00010
      Location:76 → 128
      HLH; Helix-loop-helix DNA-binding domain
      pfam00989
      Location:148 → 254
      PAS; PAS fold
      pfam11593
      Location:514 → 720
      Med3; Mediator complex subunit 3 fungal
      cl25986
      Location:347 → 447
      PAS_3; PAS fold

    5. XM_023641232.1 → XP_023497000.1  aryl hydrocarbon receptor nuclear translocator isoform X1

      UniProtKB/TrEMBL
      A0A9L0R3Q1, F6SAA3
      Related
      ENSECAP00000008218.3, ENSECAT00000010625.3
      Conserved Domains (4) summary
      pfam00010
      Location:104 → 156
      HLH; Helix-loop-helix DNA-binding domain
      pfam00989
      Location:176 → 282
      PAS; PAS fold
      pfam11593
      Location:542 → 748
      Med3; Mediator complex subunit 3 fungal
      cl25986
      Location:375 → 475
      PAS_3; PAS fold

    6. XM_023641234.1 → XP_023497002.1  aryl hydrocarbon receptor nuclear translocator isoform X3

      UniProtKB/TrEMBL
      A0A9L0R3Q1
      Related
      ENSECAP00000056350.1, ENSECAT00000123128.1
      Conserved Domains (4) summary
      pfam00010
      Location:91 → 143
      HLH; Helix-loop-helix DNA-binding domain
      pfam00989
      Location:163 → 269
      PAS; PAS fold
      pfam11593
      Location:529 → 735
      Med3; Mediator complex subunit 3 fungal
      cl25986
      Location:362 → 462
      PAS_3; PAS fold
    Nucleotide Protein
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