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    HP1BP3 heterochromatin protein 1 binding protein 3 [ Equus caballus (horse) ]

    Gene ID: 100058320, updated on 17-Aug-2024

    Summary

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    Official Symbol
    HP1BP3provided by VGNC
    Official Full Name
    heterochromatin protein 1 binding protein 3provided by VGNC
    Primary source
    VGNC:VGNC:18855
    See related
    Ensembl:ENSECAG00000007787
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See HP1BP3 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 2 NC_009145.3 (33675056..33709213)

    Chromosome 2 - NC_009145.3Genomic Context describing neighboring genes Neighboring gene dihydrofolate reductase pseudogene Neighboring gene eukaryotic translation initiation factor 4 gamma 3 Neighboring gene U6 spliceosomal RNA Neighboring gene SH2 domain containing 5 Neighboring gene uncharacterized LOC102148467 Neighboring gene kinesin family member 17

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009145.3 Chromosome 2 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in heterochromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chromosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nucleosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heterochromatin protein 1-binding protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009145.3 Reference EquCab3.0 Primary Assembly

      Range
      33675056..33709213
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023635573.1 → XP_023491341.1  heterochromatin protein 1-binding protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A9L0RNX6, A0A9L0SJG6
      Related
      ENSECAP00000006143.3, ENSECAT00000008232.3
      Conserved Domains (3) summary
      smart00526
      Location:253 → 319
      H15; Domain in histone families 1 and 5
      cd00073
      Location:155 → 245
      H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
      pfam00538
      Location:346 → 411
      Linker_histone; linker histone H1 and H5 family

    2. XM_023635578.1 → XP_023491346.1  heterochromatin protein 1-binding protein 3 isoform X2

      UniProtKB/TrEMBL
      A0A9L0RNX6
      Conserved Domains (3) summary
      smart00526
      Location:215 → 281
      H15; Domain in histone families 1 and 5
      cd00073
      Location:117 → 207
      H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
      pfam00538
      Location:308 → 373
      Linker_histone; linker histone H1 and H5 family

    3. XM_023635577.1 → XP_023491345.1  heterochromatin protein 1-binding protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A9L0RNX6, A0A9L0SJG6
      Conserved Domains (3) summary
      smart00526
      Location:253 → 319
      H15; Domain in histone families 1 and 5
      cd00073
      Location:155 → 245
      H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
      pfam00538
      Location:346 → 411
      Linker_histone; linker histone H1 and H5 family

    4. XM_023635579.1 → XP_023491347.1  heterochromatin protein 1-binding protein 3 isoform X2

      UniProtKB/TrEMBL
      A0A9L0RNX6
      Conserved Domains (3) summary
      smart00526
      Location:215 → 281
      H15; Domain in histone families 1 and 5
      cd00073
      Location:117 → 207
      H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
      pfam00538
      Location:308 → 373
      Linker_histone; linker histone H1 and H5 family

    5. XM_023635575.1 → XP_023491343.1  heterochromatin protein 1-binding protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A9L0RNX6, A0A9L0SJG6
      Related
      ENSECAP00000076224.1, ENSECAT00000125248.1
      Conserved Domains (3) summary
      smart00526
      Location:253 → 319
      H15; Domain in histone families 1 and 5
      cd00073
      Location:155 → 245
      H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
      pfam00538
      Location:346 → 411
      Linker_histone; linker histone H1 and H5 family

    6. XM_023635576.1 → XP_023491344.1  heterochromatin protein 1-binding protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A9L0RNX6, A0A9L0SJG6
      Conserved Domains (3) summary
      smart00526
      Location:253 → 319
      H15; Domain in histone families 1 and 5
      cd00073
      Location:155 → 245
      H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
      pfam00538
      Location:346 → 411
      Linker_histone; linker histone H1 and H5 family

    7. XM_001504325.5 → XP_001504375.1  heterochromatin protein 1-binding protein 3 isoform X1

      See identical proteins and their annotated locations for XP_001504375.1

      UniProtKB/TrEMBL
      A0A9L0RNX6, A0A9L0SJG6
      Related
      ENSECAP00000064267.1, ENSECAT00000109160.1
      Conserved Domains (3) summary
      smart00526
      Location:253 → 319
      H15; Domain in histone families 1 and 5
      cd00073
      Location:155 → 245
      H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
      pfam00538
      Location:346 → 411
      Linker_histone; linker histone H1 and H5 family

    8. XM_005607383.3 → XP_005607440.1  heterochromatin protein 1-binding protein 3 isoform X2

      See identical proteins and their annotated locations for XP_005607440.1

      UniProtKB/TrEMBL
      A0A9L0RNX6
      Conserved Domains (3) summary
      smart00526
      Location:215 → 281
      H15; Domain in histone families 1 and 5
      cd00073
      Location:117 → 207
      H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
      pfam00538
      Location:308 → 373
      Linker_histone; linker histone H1 and H5 family

    9. XM_023635574.1 → XP_023491342.1  heterochromatin protein 1-binding protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A9L0RNX6, A0A9L0SJG6
      Conserved Domains (3) summary
      smart00526
      Location:253 → 319
      H15; Domain in histone families 1 and 5
      cd00073
      Location:155 → 245
      H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
      pfam00538
      Location:346 → 411
      Linker_histone; linker histone H1 and H5 family
    Nucleotide Protein
    Heading Accession and Version

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