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    HDLBP high density lipoprotein binding protein [ Equus caballus (horse) ]

    Gene ID: 100057882, updated on 17-Aug-2024

    Summary

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    Official Symbol
    HDLBPprovided by VGNC
    Official Full Name
    high density lipoprotein binding proteinprovided by VGNC
    Primary source
    VGNC:VGNC:18724
    See related
    Ensembl:ENSECAG00000012829
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See HDLBP in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 6 NC_009149.3 (26548587..26624176, complement)

    Chromosome 6 - NC_009149.3Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1 regulatory subunit 7 Neighboring gene anoctamin 7 Neighboring gene septin 2 Neighboring gene FERM, ARH/RhoGEF and pleckstrin domain protein 2 Neighboring gene serine/threonine kinase 25

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009149.3 Chromosome 6 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vigilin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009149.3 Reference EquCab3.0 Primary Assembly

      Range
      26548587..26624176 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023644070.1 → XP_023499838.1  vigilin

      UniProtKB/TrEMBL
      A0A3Q2LNE8
      Conserved Domains (15) summary
      cd02394
      Location:435 → 502
      KH-I_Vigilin_rpt6; sixth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22405
      Location:77 → 144
      KH-I_Vigilin_rpt1; first type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22406
      Location:147 → 221
      KH-I_Vigilin_rpt2; second type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22407
      Location:224 → 283
      KH-I_Vigilin_rpt3; third type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22408
      Location:297 → 358
      KH-I_Vigilin_rpt4; fourth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22409
      Location:364 → 433
      KH-I_Vigilin_rpt5; fifth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22410
      Location:507 → 573
      KH-I_Vigilin_rpt7; seventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22411
      Location:583 → 644
      KH-I_Vigilin_rpt8; eighth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22412
      Location:653 → 722
      KH-I_Vigilin_rpt9; ninth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22413
      Location:726 → 791
      KH-I_Vigilin_rpt10; tenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22414
      Location:802 → 867
      KH-I_Vigilin_rpt11; eleventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22415
      Location:875 → 970
      KH-I_Vigilin_rpt12; twelfth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22416
      Location:972 → 1049
      KH-I_Vigilin_rpt13; thirteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22417
      Location:1053 → 1126
      KH-I_Vigilin_rpt14; fourteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22418
      Location:1128 → 1196
      KH-I_Vigilin_rpt15; fifteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins

    2. XM_023644073.1 → XP_023499841.1  vigilin

      UniProtKB/TrEMBL
      A0A3Q2LNE8
      Conserved Domains (15) summary
      cd02394
      Location:435 → 502
      KH-I_Vigilin_rpt6; sixth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22405
      Location:77 → 144
      KH-I_Vigilin_rpt1; first type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22406
      Location:147 → 221
      KH-I_Vigilin_rpt2; second type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22407
      Location:224 → 283
      KH-I_Vigilin_rpt3; third type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22408
      Location:297 → 358
      KH-I_Vigilin_rpt4; fourth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22409
      Location:364 → 433
      KH-I_Vigilin_rpt5; fifth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22410
      Location:507 → 573
      KH-I_Vigilin_rpt7; seventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22411
      Location:583 → 644
      KH-I_Vigilin_rpt8; eighth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22412
      Location:653 → 722
      KH-I_Vigilin_rpt9; ninth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22413
      Location:726 → 791
      KH-I_Vigilin_rpt10; tenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22414
      Location:802 → 867
      KH-I_Vigilin_rpt11; eleventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22415
      Location:875 → 970
      KH-I_Vigilin_rpt12; twelfth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22416
      Location:972 → 1049
      KH-I_Vigilin_rpt13; thirteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22417
      Location:1053 → 1126
      KH-I_Vigilin_rpt14; fourteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22418
      Location:1128 → 1196
      KH-I_Vigilin_rpt15; fifteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins

    3. XM_023644071.1 → XP_023499839.1  vigilin

      UniProtKB/TrEMBL
      A0A3Q2LNE8
      Conserved Domains (15) summary
      cd02394
      Location:435 → 502
      KH-I_Vigilin_rpt6; sixth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22405
      Location:77 → 144
      KH-I_Vigilin_rpt1; first type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22406
      Location:147 → 221
      KH-I_Vigilin_rpt2; second type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22407
      Location:224 → 283
      KH-I_Vigilin_rpt3; third type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22408
      Location:297 → 358
      KH-I_Vigilin_rpt4; fourth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22409
      Location:364 → 433
      KH-I_Vigilin_rpt5; fifth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22410
      Location:507 → 573
      KH-I_Vigilin_rpt7; seventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22411
      Location:583 → 644
      KH-I_Vigilin_rpt8; eighth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22412
      Location:653 → 722
      KH-I_Vigilin_rpt9; ninth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22413
      Location:726 → 791
      KH-I_Vigilin_rpt10; tenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22414
      Location:802 → 867
      KH-I_Vigilin_rpt11; eleventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22415
      Location:875 → 970
      KH-I_Vigilin_rpt12; twelfth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22416
      Location:972 → 1049
      KH-I_Vigilin_rpt13; thirteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22417
      Location:1053 → 1126
      KH-I_Vigilin_rpt14; fourteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22418
      Location:1128 → 1196
      KH-I_Vigilin_rpt15; fifteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins

    4. XM_001502985.5 → XP_001503035.1  vigilin

      See identical proteins and their annotated locations for XP_001503035.1

      UniProtKB/TrEMBL
      A0A3Q2LNE8
      Related
      ENSECAP00000043418.1, ENSECAT00000059795.3
      Conserved Domains (15) summary
      cd02394
      Location:435 → 502
      KH-I_Vigilin_rpt6; sixth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22405
      Location:77 → 144
      KH-I_Vigilin_rpt1; first type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22406
      Location:147 → 221
      KH-I_Vigilin_rpt2; second type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22407
      Location:224 → 283
      KH-I_Vigilin_rpt3; third type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22408
      Location:297 → 358
      KH-I_Vigilin_rpt4; fourth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22409
      Location:364 → 433
      KH-I_Vigilin_rpt5; fifth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22410
      Location:507 → 573
      KH-I_Vigilin_rpt7; seventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22411
      Location:583 → 644
      KH-I_Vigilin_rpt8; eighth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22412
      Location:653 → 722
      KH-I_Vigilin_rpt9; ninth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22413
      Location:726 → 791
      KH-I_Vigilin_rpt10; tenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22414
      Location:802 → 867
      KH-I_Vigilin_rpt11; eleventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22415
      Location:875 → 970
      KH-I_Vigilin_rpt12; twelfth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22416
      Location:972 → 1049
      KH-I_Vigilin_rpt13; thirteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22417
      Location:1053 → 1126
      KH-I_Vigilin_rpt14; fourteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22418
      Location:1128 → 1196
      KH-I_Vigilin_rpt15; fifteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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