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    ATXN2 ataxin 2 [ Equus caballus (horse) ]

    Gene ID: 100057794, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ATXN2provided by VGNC
    Official Full Name
    ataxin 2provided by VGNC
    Primary source
    VGNC:VGNC:15694
    See related
    Ensembl:ENSECAG00000014347
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See ATXN2 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 8 NC_009151.3 (23039843..23158176)

    Chromosome 8 - NC_009151.3Genomic Context describing neighboring genes Neighboring gene BRCA1 associated protein Neighboring gene uncharacterized LOC102150066 Neighboring gene uncharacterized LOC111774652 Neighboring gene SH2B adaptor protein 3 Neighboring gene uncharacterized LOC111774651 Neighboring gene uncharacterized LOC111774650

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009151.3 Chromosome 8 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in stress granule assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic stress granule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ataxin-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009151.3 Reference EquCab3.0 Primary Assembly

      Range
      23039843..23158176
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023647148.1 → XP_023502916.1  ataxin-2 isoform X6

      UniProtKB/TrEMBL
      A0A9L0T7F2
      Related
      ENSECAP00000026122.3, ENSECAT00000051211.3
      Conserved Domains (4) summary
      pfam07145
      Location:904 → 920
      PAM2; Ataxin-2 C-terminal region
      pfam06741
      Location:404 → 465
      LsmAD; LsmAD domain
      pfam14438
      Location:263 → 336
      SM-ATX; Ataxin 2 SM domain
      cl26464
      Location:924 → 1240
      Atrophin-1; Atrophin-1 family

    2. XM_023647143.1 → XP_023502911.1  ataxin-2 isoform X1

      UniProtKB/TrEMBL
      A0A9L0T7F2
      Conserved Domains (4) summary
      pfam06741
      Location:154 → 215
      LsmAD; LsmAD domain
      pfam14438
      Location:13 → 86
      SM-ATX; Ataxin 2 SM domain
      cl25764
      Location:765 → 1026
      PAT1; Topoisomerase II-associated protein PAT1
      cl25887
      Location:655 → 813
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

    3. XM_023647144.1 → XP_023502912.1  ataxin-2 isoform X2

      UniProtKB/TrEMBL
      A0A9L0T7F2
      Conserved Domains (4) summary
      pfam07145
      Location:654 → 670
      PAM2; Ataxin-2 C-terminal region
      pfam06741
      Location:154 → 215
      LsmAD; LsmAD domain
      pfam14438
      Location:13 → 86
      SM-ATX; Ataxin 2 SM domain
      cl26464
      Location:674 → 969
      Atrophin-1; Atrophin-1 family

    4. XM_023647146.1 → XP_023502914.1  ataxin-2 isoform X4

      UniProtKB/TrEMBL
      A0A9L0T7F2
      Conserved Domains (4) summary
      pfam07145
      Location:654 → 670
      PAM2; Ataxin-2 C-terminal region
      pfam06741
      Location:154 → 215
      LsmAD; LsmAD domain
      pfam14438
      Location:13 → 86
      SM-ATX; Ataxin 2 SM domain
      cl26464
      Location:674 → 958
      Atrophin-1; Atrophin-1 family

    5. XM_023647145.1 → XP_023502913.1  ataxin-2 isoform X3

      UniProtKB/TrEMBL
      A0A9L0T7F2
      Related
      ENSECAP00000012492.3, ENSECAT00000015533.4
      Conserved Domains (5) summary
      PHA03247
      Location:674 → 1018
      PHA03247; large tegument protein UL36; Provisional
      COG5180
      Location:99 → 244
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:154 → 215
      LsmAD; LsmAD domain
      pfam07145
      Location:656 → 670
      PAM2; Ataxin-2 C-terminal region
      pfam14438
      Location:13 → 86
      SM-ATX; Ataxin 2 SM domain

    6. XM_023647147.1 → XP_023502915.1  ataxin-2 isoform X5

      UniProtKB/TrEMBL
      A0A9L0T7F2
      Related
      ENSECAP00000051073.1, ENSECAT00000069030.2
      Conserved Domains (3) summary
      pfam06741
      Location:154 → 215
      LsmAD; LsmAD domain
      pfam14438
      Location:13 → 86
      SM-ATX; Ataxin 2 SM domain
      cl26464
      Location:674 → 998
      Atrophin-1; Atrophin-1 family
    Nucleotide Protein
    Heading Accession and Version

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