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    GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 [ Equus caballus (horse) ]

    Gene ID: 100057236, updated on 17-Aug-2024

    Summary

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    Official Symbol
    GDPD1provided by VGNC
    Official Full Name
    glycerophosphodiester phosphodiesterase domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:18296
    See related
    Ensembl:ENSECAG00000015552
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See GDPD1 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 11 NC_009154.3 (33630678..33682033)

    Chromosome 11 - NC_009154.3Genomic Context describing neighboring genes Neighboring gene proline rich 11 Neighboring gene SMG8 nonsense mediated mRNA decay factor Neighboring gene uncharacterized LOC111775679 Neighboring gene yippee like 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009154.3 Chromosome 11 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lysophospholipase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphoric diester hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in N-acylethanolamine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glycerophospholipid catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lysophospholipase D GDPD1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009154.3 Reference EquCab3.0 Primary Assembly

      Range
      33630678..33682033
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005597526.3 → XP_005597583.1  lysophospholipase D GDPD1

      See identical proteins and their annotated locations for XP_005597583.1

      UniProtKB/TrEMBL
      A0A5F5PNW8, F6U0M2
      Related
      ENSECAP00000013322.1, ENSECAT00000016495.3
      Conserved Domains (1) summary
      cd08612
      Location:14 → 311
      GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

    RNA

    1. XR_002811576.1 RNA Sequence

      Related
      ENSECAT00000067176.2

    2. XR_002811575.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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    Research Materials