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    OSR1 odd-skipped related transcription factor 1 [ Equus caballus (horse) ]

    Gene ID: 100056547, updated on 17-Aug-2024

    Summary

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    Official Symbol
    OSR1provided by VGNC
    Official Full Name
    odd-skipped related transcription factor 1provided by VGNC
    Primary source
    VGNC:VGNC:21075
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See OSR1 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 15 NC_009158.3 (76981152..76988325)

    Chromosome 15 - NC_009158.3Genomic Context describing neighboring genes Neighboring gene transfer RNA alanine (anticodon UGC) Neighboring gene ubiquitin-conjugating enzyme E2 variant 2 pseudogene Neighboring gene uncharacterized LOC111768146 Neighboring gene uncharacterized LOC111768147

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009158.3 Chromosome 15 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in embryo development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in urogenital system development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein odd-skipped-related 1
    Names
    odd-skipped related 1
    odd-skipped related transciption factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009158.3 Reference EquCab3.0 Primary Assembly

      Range
      76981152..76988325
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001503384.6 → XP_001503434.3  protein odd-skipped-related 1

      Conserved Domains (3) summary
      sd00017
      Location:178 → 198
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:176 → 198
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:190 → 215
      zf-H2C2_2; Zinc-finger double domain

    2. XM_005600194.3 → XP_005600251.2  protein odd-skipped-related 1

      Conserved Domains (3) summary
      sd00017
      Location:178 → 198
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:176 → 198
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:190 → 215
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version

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