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    CRTAP cartilage associated protein [ Equus caballus (horse) ]

    Gene ID: 100056249, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CRTAPprovided by VGNC
    Official Full Name
    cartilage associated proteinprovided by VGNC
    Primary source
    VGNC:VGNC:16877
    See related
    Ensembl:ENSECAG00000008409
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See CRTAP in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 16 NC_009159.3 (52739555..52763719, complement)

    Chromosome 16 - NC_009159.3Genomic Context describing neighboring genes Neighboring gene upstream binding protein 1 Neighboring gene F-box and leucine rich repeat protein 2 Neighboring gene uncharacterized LOC111768386 Neighboring gene sushi domain containing 5 Neighboring gene transmembrane protein with metallophosphoesterase domain Neighboring gene galactosidase beta 1 Neighboring gene 60S ribosomal protein L36 pseudogene

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009159.3 Chromosome 16 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables collagen binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in collagen fibril organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in peptidyl-proline hydroxylation to 3-hydroxy-L-proline IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cartilage-associated protein
    Names
    cartilage-associated-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009159.3 Reference EquCab3.0 Primary Assembly

      Range
      52739555..52763719 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005614906.2 → XP_005614963.2  cartilage-associated protein

      UniProtKB/TrEMBL
      A0A9L0S6C4, A0A9L0TBC1
      Related
      ENSECAP00000070442.1, ENSECAT00000128655.1
    Nucleotide Protein
    Heading Accession and Version

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