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    GRHL2 grainyhead like transcription factor 2 [ Equus caballus (horse) ]

    Gene ID: 100056140, updated on 17-Aug-2024

    Summary

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    Official Symbol
    GRHL2provided by VGNC
    Official Full Name
    grainyhead like transcription factor 2provided by VGNC
    Primary source
    VGNC:VGNC:18575
    See related
    Ensembl:ENSECAG00000013681
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See GRHL2 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 9 NC_009152.3 (48820516..48976540)

    Chromosome 9 - NC_009152.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111774992 Neighboring gene uncharacterized LOC111774993 Neighboring gene uncharacterized LOC111774994 Neighboring gene uncharacterized LOC111774995 Neighboring gene neurocalcin delta Neighboring gene small nucleolar RNA SNORA25 Neighboring gene ribonucleotide reductase regulatory TP53 inducible subunit M2B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009152.3 Chromosome 9 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in brain development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neural tube development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    grainyhead-like protein 2 homolog
    Names
    grainyhead-like 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009152.3 Reference EquCab3.0 Primary Assembly

      Range
      48820516..48976540
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014728225.2 → XP_014583711.1  grainyhead-like protein 2 homolog isoform X3

      UniProtKB/TrEMBL
      A0A9L0SA68
      Conserved Domains (1) summary
      pfam04516
      Location:213 → 422
      CP2; CP2 transcription factor

    2. XM_005613235.3 → XP_005613292.1  grainyhead-like protein 2 homolog isoform X1

      See identical proteins and their annotated locations for XP_005613292.1

      UniProtKB/TrEMBL
      A0A9L0SA68, F7BG04
      Related
      ENSECAP00000011766.3, ENSECAT00000014706.4
      Conserved Domains (1) summary
      pfam04516
      Location:229 → 438
      CP2; CP2 transcription factor

    3. XM_014728223.2 → XP_014583709.1  grainyhead-like protein 2 homolog isoform X2

      UniProtKB/TrEMBL
      A0A9L0SA68
      Conserved Domains (1) summary
      pfam04516
      Location:229 → 438
      CP2; CP2 transcription factor

    4. XM_014728224.2 → XP_014583710.1  grainyhead-like protein 2 homolog isoform X3

      UniProtKB/TrEMBL
      A0A9L0SA68
      Conserved Domains (1) summary
      pfam04516
      Location:213 → 422
      CP2; CP2 transcription factor

    5. XM_014728226.2 → XP_014583712.1  grainyhead-like protein 2 homolog isoform X3

      UniProtKB/TrEMBL
      A0A9L0SA68
      Conserved Domains (1) summary
      pfam04516
      Location:213 → 422
      CP2; CP2 transcription factor
    Nucleotide Protein
    Heading Accession and Version

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