U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    TNNT1 troponin T1, slow skeletal type [ Equus caballus (horse) ]

    Gene ID: 100055363, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    TNNT1provided by VGNC
    Official Full Name
    troponin T1, slow skeletal typeprovided by VGNC
    Primary source
    VGNC:VGNC:24392
    See related
    Ensembl:ENSECAG00000015657
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See TNNT1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 10 NC_009153.3 (24790062..24802695, complement)

    Chromosome 10 - NC_009153.3Genomic Context describing neighboring genes Neighboring gene EPS8 signaling adaptor L1 Neighboring gene microRNA mir-9086 Neighboring gene troponin I3, cardiac type Neighboring gene dynein axonemal assembly factor 3 Neighboring gene synaptotagmin 5

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_009153.3 Chromosome 10 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables tropomyosin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables troponin T binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of muscle contraction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sarcomere organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in slow-twitch skeletal muscle fiber contraction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of troponin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    troponin T, slow skeletal muscle

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009153.3 Reference EquCab3.0 Primary Assembly

      Range
      24790062..24802695 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023650512.1 → XP_023506280.1  troponin T, slow skeletal muscle isoform X3

      UniProtKB/TrEMBL
      F6TT86
      Related
      ENSECAP00000013362.4, ENSECAT00000016548.4
      Conserved Domains (1) summary
      pfam00992
      Location:59 → 195
      Troponin

    2. XM_023650511.1 → XP_023506279.1  troponin T, slow skeletal muscle isoform X2

      UniProtKB/TrEMBL
      A0A5F5PEL3, F6TT86
      Related
      ENSECAP00000046841.2, ENSECAT00000075144.2
      Conserved Domains (1) summary
      pfam00992
      Location:70 → 206
      Troponin

    3. XM_023650510.1 → XP_023506278.1  troponin T, slow skeletal muscle isoform X1

      UniProtKB/TrEMBL
      A0A5F5PEL3
      Conserved Domains (1) summary
      pfam00992
      Location:77 → 213
      Troponin
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.