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    NEUROD6 neuronal differentiation 6 [ Equus caballus (horse) ]

    Gene ID: 100055160, updated on 17-Aug-2024

    Summary

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    Official Symbol
    NEUROD6provided by VGNC
    Official Full Name
    neuronal differentiation 6provided by VGNC
    Primary source
    VGNC:VGNC:20695
    See related
    Ensembl:ENSECAG00000020776
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See NEUROD6 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 4 NC_009147.3 (61938403..61942078, complement)

    Chromosome 4 - NC_009147.3Genomic Context describing neighboring genes Neighboring gene ADCYAP receptor type I Neighboring gene uncharacterized LOC111773210 Neighboring gene uncharacterized LOC111773211 Neighboring gene uncharacterized LOC106783056

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009147.3 Chromosome 4 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables E-box binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nervous system development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sensory organ development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    neurogenic differentiation factor 6
    Names
    neurogenic differentiation 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009147.3 Reference EquCab3.0 Primary Assembly

      Range
      61938403..61942078 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023639472.1 → XP_023495240.1  neurogenic differentiation factor 6

      UniProtKB/TrEMBL
      F6U888
      Related
      ENSECAP00000018189.1, ENSECAT00000022032.3
      Conserved Domains (2) summary
      smart00353
      Location:100 → 151
      HLH; helix loop helix domain
      pfam12533
      Location:153 → 272
      Neuro_bHLH; Neuronal helix-loop-helix transcription factor
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials