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    SLC30A1 solute carrier family 30 member 1 [ Equus caballus (horse) ]

    Gene ID: 100054805, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SLC30A1provided by VGNC
    Official Full Name
    solute carrier family 30 member 1provided by VGNC
    Primary source
    VGNC:VGNC:58679
    See related
    Ensembl:ENSECAG00000003051
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See SLC30A1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 5 NC_009148.3 (24178719..24186089)

    Chromosome 5 - NC_009148.3Genomic Context describing neighboring genes Neighboring gene NIMA related kinase 2 Neighboring gene microRNA mir-8972 Neighboring gene RD3 regulator of GUCY2D Neighboring gene putative uncharacterized protein encoded by LINC00467

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009148.3 Chromosome 5 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium channel inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in detoxification of zinc ion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular zinc ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in zinc ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    proton-coupled zinc antiporter SLC30A1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009148.3 Reference EquCab3.0 Primary Assembly

      Range
      24178719..24186089
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023640758.1 → XP_023496526.1  proton-coupled zinc antiporter SLC30A1

      UniProtKB/TrEMBL
      F7DUJ0
      Related
      ENSECAP00000002068.2, ENSECAT00000002890.4
      Conserved Domains (1) summary
      COG1230
      Location:6 → 421
      CzcD; Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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