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    ECM1 extracellular matrix protein 1 [ Equus caballus (horse) ]

    Gene ID: 100054714, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ECM1provided by VGNC
    Official Full Name
    extracellular matrix protein 1provided by VGNC
    Primary source
    VGNC:VGNC:17409
    See related
    Ensembl:ENSECAG00000008545
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See ECM1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 5 NC_009148.3 (43248216..43253649, complement)

    Chromosome 5 - NC_009148.3Genomic Context describing neighboring genes Neighboring gene MCL1 apoptosis regulator, BCL2 family member Neighboring gene ADAMTS like 4 Neighboring gene threonyl-tRNA synthetase 2, mitochondrial Neighboring gene regulation of nuclear pre-mRNA domain containing 2 Neighboring gene elongation factor 1-alpha 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009148.3 Chromosome 5 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of bone mineralization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in collagen-containing extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    extracellular matrix protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009148.3 Reference EquCab3.0 Primary Assembly

      Range
      43248216..43253649 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023641257.1 → XP_023497025.1  extracellular matrix protein 1 isoform X4

      Conserved Domains (1) summary
      pfam05782
      Location:5 → 392
      ECM1; Extracellular matrix protein 1 (ECM1)

    2. XM_023641256.1 → XP_023497024.1  extracellular matrix protein 1 isoform X3

      UniProtKB/TrEMBL
      F6QYS3
      Conserved Domains (1) summary
      pfam05782
      Location:5 → 517
      ECM1; Extracellular matrix protein 1 (ECM1)

    3. XM_023641255.1 → XP_023497023.1  extracellular matrix protein 1 isoform X2

      UniProtKB/TrEMBL
      F6QYS3
      Conserved Domains (1) summary
      pfam05782
      Location:5 → 535
      ECM1; Extracellular matrix protein 1 (ECM1)

    4. XM_023641254.1 → XP_023497022.1  extracellular matrix protein 1 isoform X1

      UniProtKB/TrEMBL
      F6QYS3
      Related
      ENSECAP00000006842.4, ENSECAT00000009053.4
      Conserved Domains (1) summary
      pfam05782
      Location:5 → 536
      ECM1; Extracellular matrix protein 1 (ECM1)
    Nucleotide Protein
    Heading Accession and Version

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