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    USP18 ubiquitin specific peptidase 18 [ Equus caballus (horse) ]

    Gene ID: 100054488, updated on 15-Aug-2024

    Summary

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    Gene symbol
    USP18
    Gene description
    ubiquitin specific peptidase 18
    See related
    Ensembl:ENSECAG00000000284
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See USP18 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 6 NC_009149.3 (28115560..28170848, complement)

    Chromosome 6 - NC_009149.3Genomic Context describing neighboring genes Neighboring gene olfactory receptor family 8 subfamily K member 88, pseudogene Neighboring gene elongation of very long chain fatty acids protein 2 pseudogene Neighboring gene uncharacterized LOC111773885 Neighboring gene tubulin alpha 8 Neighboring gene uncharacterized LOC106783283

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009149.3 Chromosome 6 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubl carboxyl-terminal hydrolase 18
    Names
    ubiquitin specific protease 18

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009149.3 Reference EquCab3.0 Primary Assembly

      Range
      28115560..28170848 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023642820.1 → XP_023498588.1  ubl carboxyl-terminal hydrolase 18

      UniProtKB/TrEMBL
      A0A9L0S307
      Conserved Domains (1) summary
      pfam00443
      Location:57 → 369
      UCH; Ubiquitin carboxyl-terminal hydrolase

    2. XM_014740623.2 → XP_014596109.1  ubl carboxyl-terminal hydrolase 18

      UniProtKB/TrEMBL
      A0A9L0S307
      Related
      ENSECAP00000083370.1, ENSECAT00000097257.1
      Conserved Domains (1) summary
      pfam00443
      Location:57 → 369
      UCH; Ubiquitin carboxyl-terminal hydrolase
    Nucleotide Protein
    Heading Accession and Version

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