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    OTUD7B OTU deubiquitinase 7B [ Equus caballus (horse) ]

    Gene ID: 100054396, updated on 17-Aug-2024

    Summary

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    Official Symbol
    OTUD7Bprovided by VGNC
    Official Full Name
    OTU deubiquitinase 7Bprovided by VGNC
    Primary source
    VGNC:VGNC:50857
    See related
    Ensembl:ENSECAG00000019449
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See OTUD7B in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 5 NC_009148.3 (43633620..43688002)

    Chromosome 5 - NC_009148.3Genomic Context describing neighboring genes Neighboring gene vacuolar protein sorting 45 homolog Neighboring gene uncharacterized LOC102149242 Neighboring gene uncharacterized LOC111773532 Neighboring gene myotubularin related protein 11 Neighboring gene splicing factor 3b subunit 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009148.3 Chromosome 5 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables K63-linked polyubiquitin modification-dependent protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein K11-linked deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K48-linked deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K63-linked deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein deubiquitination involved in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    OTU domain-containing protein 7B
    Names
    OTU domain containing 7B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009148.3 Reference EquCab3.0 Primary Assembly

      Range
      43633620..43688002
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023641282.1 → XP_023497050.1  OTU domain-containing protein 7B isoform X3

      UniProtKB/TrEMBL
      A0A3Q2I3I6
      Related
      ENSECAP00000028304.1, ENSECAT00000057536.3
      Conserved Domains (5) summary
      cd14347
      Location:4 → 46
      UBA_Cezanne_like; UBA-like domain found in OTU domain-containing proteins OTU7A, OTU7B and similar proteins
      pfam01754
      Location:801 → 823
      zf-A20; A20-like zinc finger
      pfam09507
      Location:367 → 674
      CDC27; DNA polymerase subunit Cdc27
      cl19932
      Location:189 → 359
      OTU; OTU-like cysteine protease
      cl25756
      Location:440 → 581
      BASP1; Brain acid soluble protein 1 (BASP1 protein)

    2. XM_023641278.1 → XP_023497046.1  OTU domain-containing protein 7B isoform X3

      UniProtKB/TrEMBL
      A0A3Q2I3I6
      Conserved Domains (5) summary
      cd14347
      Location:4 → 46
      UBA_Cezanne_like; UBA-like domain found in OTU domain-containing proteins OTU7A, OTU7B and similar proteins
      pfam01754
      Location:801 → 823
      zf-A20; A20-like zinc finger
      pfam09507
      Location:367 → 674
      CDC27; DNA polymerase subunit Cdc27
      cl19932
      Location:189 → 359
      OTU; OTU-like cysteine protease
      cl25756
      Location:440 → 581
      BASP1; Brain acid soluble protein 1 (BASP1 protein)

    3. XM_023641275.1 → XP_023497043.1  OTU domain-containing protein 7B isoform X1

      UniProtKB/TrEMBL
      F7DF20
      Conserved Domains (5) summary
      cd14347
      Location:40 → 82
      UBA_Cezanne_like; UBA-like domain found in OTU domain-containing proteins OTU7A, OTU7B and similar proteins
      pfam01754
      Location:837 → 859
      zf-A20; A20-like zinc finger
      pfam09507
      Location:403 → 710
      CDC27; DNA polymerase subunit Cdc27
      cl19932
      Location:225 → 395
      OTU; OTU-like cysteine protease
      cl25756
      Location:476 → 617
      BASP1; Brain acid soluble protein 1 (BASP1 protein)

    4. XM_023641276.1 → XP_023497044.1  OTU domain-containing protein 7B isoform X1

      UniProtKB/TrEMBL
      F7DF20
      Related
      ENSECAP00000017121.3, ENSECAT00000020830.3
      Conserved Domains (5) summary
      cd14347
      Location:40 → 82
      UBA_Cezanne_like; UBA-like domain found in OTU domain-containing proteins OTU7A, OTU7B and similar proteins
      pfam01754
      Location:837 → 859
      zf-A20; A20-like zinc finger
      pfam09507
      Location:403 → 710
      CDC27; DNA polymerase subunit Cdc27
      cl19932
      Location:225 → 395
      OTU; OTU-like cysteine protease
      cl25756
      Location:476 → 617
      BASP1; Brain acid soluble protein 1 (BASP1 protein)

    5. XM_014739877.2 → XP_014595363.2  OTU domain-containing protein 7B isoform X3

      UniProtKB/TrEMBL
      A0A3Q2I3I6
      Conserved Domains (5) summary
      cd14347
      Location:4 → 46
      UBA_Cezanne_like; UBA-like domain found in OTU domain-containing proteins OTU7A, OTU7B and similar proteins
      pfam01754
      Location:801 → 823
      zf-A20; A20-like zinc finger
      pfam09507
      Location:367 → 674
      CDC27; DNA polymerase subunit Cdc27
      cl19932
      Location:189 → 359
      OTU; OTU-like cysteine protease
      cl25756
      Location:440 → 581
      BASP1; Brain acid soluble protein 1 (BASP1 protein)

    6. XM_023641281.1 → XP_023497049.1  OTU domain-containing protein 7B isoform X3

      UniProtKB/TrEMBL
      A0A3Q2I3I6
      Conserved Domains (5) summary
      cd14347
      Location:4 → 46
      UBA_Cezanne_like; UBA-like domain found in OTU domain-containing proteins OTU7A, OTU7B and similar proteins
      pfam01754
      Location:801 → 823
      zf-A20; A20-like zinc finger
      pfam09507
      Location:367 → 674
      CDC27; DNA polymerase subunit Cdc27
      cl19932
      Location:189 → 359
      OTU; OTU-like cysteine protease
      cl25756
      Location:440 → 581
      BASP1; Brain acid soluble protein 1 (BASP1 protein)

    7. XM_023641279.1 → XP_023497047.1  OTU domain-containing protein 7B isoform X3

      UniProtKB/TrEMBL
      A0A3Q2I3I6
      Conserved Domains (5) summary
      cd14347
      Location:4 → 46
      UBA_Cezanne_like; UBA-like domain found in OTU domain-containing proteins OTU7A, OTU7B and similar proteins
      pfam01754
      Location:801 → 823
      zf-A20; A20-like zinc finger
      pfam09507
      Location:367 → 674
      CDC27; DNA polymerase subunit Cdc27
      cl19932
      Location:189 → 359
      OTU; OTU-like cysteine protease
      cl25756
      Location:440 → 581
      BASP1; Brain acid soluble protein 1 (BASP1 protein)

    8. XM_023641280.1 → XP_023497048.1  OTU domain-containing protein 7B isoform X3

      UniProtKB/TrEMBL
      A0A3Q2I3I6
      Conserved Domains (5) summary
      cd14347
      Location:4 → 46
      UBA_Cezanne_like; UBA-like domain found in OTU domain-containing proteins OTU7A, OTU7B and similar proteins
      pfam01754
      Location:801 → 823
      zf-A20; A20-like zinc finger
      pfam09507
      Location:367 → 674
      CDC27; DNA polymerase subunit Cdc27
      cl19932
      Location:189 → 359
      OTU; OTU-like cysteine protease
      cl25756
      Location:440 → 581
      BASP1; Brain acid soluble protein 1 (BASP1 protein)

    9. XM_023641277.1 → XP_023497045.1  OTU domain-containing protein 7B isoform X2

      UniProtKB/TrEMBL
      A0A9L0TRP0
      Related
      ENSECAP00000089332.1, ENSECAT00000148538.1
      Conserved Domains (5) summary
      cd14347
      Location:35 → 77
      UBA_Cezanne_like; UBA-like domain found in OTU domain-containing proteins OTU7A, OTU7B and similar proteins
      pfam01754
      Location:832 → 854
      zf-A20; A20-like zinc finger
      pfam09507
      Location:398 → 705
      CDC27; DNA polymerase subunit Cdc27
      cl19932
      Location:220 → 390
      OTU; OTU-like cysteine protease
      cl25756
      Location:471 → 612
      BASP1; Brain acid soluble protein 1 (BASP1 protein)
    Nucleotide Protein
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