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    IFT88 intraflagellar transport 88 [ Equus caballus (horse) ]

    Gene ID: 100054328, updated on 17-Aug-2024

    Summary

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    Official Symbol
    IFT88provided by VGNC
    Official Full Name
    intraflagellar transport 88provided by VGNC
    Primary source
    VGNC:VGNC:18966
    See related
    Ensembl:ENSECAG00000009365
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See IFT88 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 17 NC_009160.3 (1526776..1662043)

    Chromosome 17 - NC_009160.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111768541 Neighboring gene crystallin lambda 1 Neighboring gene EEF1A lysine methyltransferase 1 Neighboring gene exportin 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009160.3 Chromosome 17 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables kinesin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in inner ear receptor cell stereocilium organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intraciliary transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in kidney development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in non-motile cilium assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in centriole IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ciliary basal body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ciliary base IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in non-motile cilium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    intraflagellar transport protein 88 homolog
    Names
    intraflagellar transport 88 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009160.3 Reference EquCab3.0 Primary Assembly

      Range
      1526776..1662043
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005601085.3 → XP_005601142.1  intraflagellar transport protein 88 homolog isoform X1

      UniProtKB/TrEMBL
      A0A5F5PHB4
      Related
      ENSECAP00000045288.3, ENSECAT00000065349.3
      Conserved Domains (5) summary
      COG0457
      Location:429 → 687
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:485 → 513
      TPR; TPR repeat [structural motif]
      cd15832
      Location:515 → 548
      SNAP; TPR repeat [structural motif]
      pfam00515
      Location:238 → 265
      TPR_1; Tetratricopeptide repeat
      cl24038
      Location:501 → 723
      SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family

    2. XM_014731953.2 → XP_014587439.1  intraflagellar transport protein 88 homolog isoform X2

      UniProtKB/TrEMBL
      A0A5F5PHB4
      Conserved Domains (5) summary
      COG0457
      Location:429 → 687
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:485 → 513
      TPR; TPR repeat [structural motif]
      cd15832
      Location:515 → 548
      SNAP; TPR repeat [structural motif]
      pfam00515
      Location:238 → 265
      TPR_1; Tetratricopeptide repeat
      cl24038
      Location:501 → 723
      SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family
    Nucleotide Protein
    Heading Accession and Version

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