U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    CBX3 chromobox 3 [ Equus caballus (horse) ]

    Gene ID: 100054158, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CBX3provided by VGNC
    Official Full Name
    chromobox 3provided by VGNC
    Primary source
    VGNC:VGNC:51930
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CBX3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 4 NC_009147.3 (57562034..57573824)

    Chromosome 4 - NC_009147.3Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S19 pseudogene Neighboring gene NFE2 like bZIP transcription factor 3 Neighboring gene heterogeneous nuclear ribonucleoprotein A2/B1 Neighboring gene sorting nexin 10 Neighboring gene src kinase associated phosphoprotein 2 Neighboring gene uncharacterized LOC102147526

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_009147.3 Chromosome 4 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables methylated histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of pericentric heterochromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    chromobox protein homolog 3

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009147.3 Reference EquCab3.0 Primary Assembly

      Range
      57562034..57573824
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023639400.1 → XP_023495168.1  chromobox protein homolog 3 isoform X1

      Conserved Domains (2) summary
      cd18652
      Location:29 → 78
      CD_HP1gamma_Cbx3; chromodomain of heterochromatin protein 1 homolog gamma
      cd18656
      Location:117 → 174
      CSD_HP1gamma_Cbx3; chromo shadow domain of heterochromatin protein 1 gamma homolog gamma

    2. XM_023639404.1 → XP_023495172.1  chromobox protein homolog 3 isoform X3

      Conserved Domains (2) summary
      cd18652
      Location:28 → 77
      CD_HP1gamma_Cbx3; chromodomain of heterochromatin protein 1 homolog gamma
      cd18656
      Location:116 → 173
      CSD_HP1gamma_Cbx3; chromo shadow domain of heterochromatin protein 1 gamma homolog gamma

    3. XM_023639406.1 → XP_023495174.1  chromobox protein homolog 3 isoform X5

      Conserved Domains (2) summary
      cd18652
      Location:19 → 68
      CD_HP1gamma_Cbx3; chromodomain of heterochromatin protein 1 homolog gamma
      cl28914
      Location:107 → 164
      CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains

    4. XM_023639407.1 → XP_023495175.1  chromobox protein homolog 3 isoform X5

      Conserved Domains (2) summary
      cd18652
      Location:19 → 68
      CD_HP1gamma_Cbx3; chromodomain of heterochromatin protein 1 homolog gamma
      cl28914
      Location:107 → 164
      CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains

    5. XM_023639402.1 → XP_023495170.1  chromobox protein homolog 3 isoform X2

      Conserved Domains (2) summary
      cd18652
      Location:29 → 78
      CD_HP1gamma_Cbx3; chromodomain of heterochromatin protein 1 homolog gamma
      cd18656
      Location:116 → 173
      CSD_HP1gamma_Cbx3; chromo shadow domain of heterochromatin protein 1 gamma homolog gamma

    6. XM_023639399.1 → XP_023495167.1  chromobox protein homolog 3 isoform X1

      Conserved Domains (2) summary
      cd18652
      Location:29 → 78
      CD_HP1gamma_Cbx3; chromodomain of heterochromatin protein 1 homolog gamma
      cd18656
      Location:117 → 174
      CSD_HP1gamma_Cbx3; chromo shadow domain of heterochromatin protein 1 gamma homolog gamma

    7. XM_023639403.1 → XP_023495171.1  chromobox protein homolog 3 isoform X3

      Conserved Domains (2) summary
      cd18652
      Location:28 → 77
      CD_HP1gamma_Cbx3; chromodomain of heterochromatin protein 1 homolog gamma
      cd18656
      Location:116 → 173
      CSD_HP1gamma_Cbx3; chromo shadow domain of heterochromatin protein 1 gamma homolog gamma

    8. XM_023639401.1 → XP_023495169.1  chromobox protein homolog 3 isoform X2

      Conserved Domains (2) summary
      cd18652
      Location:29 → 78
      CD_HP1gamma_Cbx3; chromodomain of heterochromatin protein 1 homolog gamma
      cd18656
      Location:116 → 173
      CSD_HP1gamma_Cbx3; chromo shadow domain of heterochromatin protein 1 gamma homolog gamma

    9. XM_023639405.1 → XP_023495173.1  chromobox protein homolog 3 isoform X4

      Conserved Domains (2) summary
      pfam00385
      Location:29 → 78
      Chromo; Chromo (CHRromatin Organisation MOdifier) domain
      pfam01393
      Location:121 → 173
      Chromo_shadow; Chromo shadow domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials