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    STC1 stanniocalcin 1 [ Equus caballus (horse) ]

    Gene ID: 100054071, updated on 17-Aug-2024

    Summary

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    Official Symbol
    STC1provided by VGNC
    Official Full Name
    stanniocalcin 1provided by VGNC
    Primary source
    VGNC:VGNC:23672
    See related
    Ensembl:ENSECAG00000013731
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See STC1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 2 NC_009145.3 (52762639..52774908, complement)

    Chromosome 2 - NC_009145.3Genomic Context describing neighboring genes Neighboring gene NK3 homeobox 1 Neighboring gene NK2 homeobox 6 Neighboring gene uncharacterized LOC106782846 Neighboring gene 60S ribosomal protein L26-like 1 pseudogene

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009145.3 Chromosome 2 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hormone activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular calcium ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    stanniocalcin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009145.3 Reference EquCab3.0 Primary Assembly

      Range
      52762639..52774908 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001493195.4 → XP_001493245.1  stanniocalcin-1

      See identical proteins and their annotated locations for XP_001493245.1

      UniProtKB/TrEMBL
      A0A9L0SBT2
      Related
      ENSECAP00000073589.1, ENSECAT00000138544.1
      Conserved Domains (1) summary
      pfam03298
      Location:6 → 206
      Stanniocalcin; Stanniocalcin family
    Nucleotide Protein
    Heading Accession and Version

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