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    HOXD3 homeobox D3 [ Equus caballus (horse) ]

    Gene ID: 100053542, updated on 17-Aug-2024

    Summary

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    Official Symbol
    HOXD3provided by VGNC
    Official Full Name
    homeobox D3provided by VGNC
    Primary source
    VGNC:VGNC:18853
    See related
    Ensembl:ENSECAG00000022129
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See HOXD3 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 18 NC_009161.3 (54654561..54667180)

    Chromosome 18 - NC_009161.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100629967 Neighboring gene homeobox D4 Neighboring gene microRNA mir-10b Neighboring gene uncharacterized LOC106781921 Neighboring gene uncharacterized LOC111768748

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009161.3 Chromosome 18 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Deletion of 2.7 kb near HOXD3 in an Arabian horse with occipitoatlantoaxial malformation. Bordbari MH, et al. Anim Genet, 2017 Jun. PMID 28111759, Free PMC Article
    2. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anterior/posterior pattern specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in embryonic skeletal system morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox protein Hox-D3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009161.3 Reference EquCab3.0 Primary Assembly

      Range
      54654561..54667180
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023622044.1 → XP_023477812.1  homeobox protein Hox-D3

      UniProtKB/TrEMBL
      F6XKG4
      Conserved Domains (2) summary
      pfam00046
      Location:198 → 250
      Homeobox; Homeobox domain
      pfam13293
      Location:369 → 430
      DUF4074; Domain of unknown function (DUF4074)

    2. XM_023622045.1 → XP_023477813.1  homeobox protein Hox-D3

      UniProtKB/TrEMBL
      F6XKG4
      Related
      ENSECAP00000019529.1, ENSECAT00000023568.3
      Conserved Domains (2) summary
      pfam00046
      Location:198 → 250
      Homeobox; Homeobox domain
      pfam13293
      Location:369 → 430
      DUF4074; Domain of unknown function (DUF4074)
    Nucleotide Protein
    Heading Accession and Version

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