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    ATP6V0D1 ATPase H+ transporting V0 subunit d1 [ Equus caballus (horse) ]

    Gene ID: 100053316, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ATP6V0D1provided by VGNC
    Official Full Name
    ATPase H+ transporting V0 subunit d1provided by VGNC
    Primary source
    VGNC:VGNC:15672
    See related
    Ensembl:ENSECAG00000015817
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See ATP6V0D1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 3 NC_009146.3 (18575277..18611509, complement)

    Chromosome 3 - NC_009146.3Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 36 Neighboring gene zinc finger DHHC-type containing 1 Neighboring gene hydroxysteroid 11-beta dehydrogenase 2 Neighboring gene RHO family interacting cell polarization regulator 1 Neighboring gene agouti related neuropeptide Neighboring gene uncharacterized LOC111773014 Neighboring gene uncharacterized LOC111773013

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009146.3 Chromosome 3 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables proton-transporting ATPase activity, rotational mechanism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proton transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vacuolar acidification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vacuolar transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in early endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in lysosomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of plasma membrane proton-transporting V-type ATPase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proton-transporting V-type ATPase, V0 domain IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of vacuolar proton-transporting V-type ATPase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    V-type proton ATPase subunit d 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009146.3 Reference EquCab3.0 Primary Assembly

      Range
      18575277..18611509 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001497669.4 → XP_001497719.1  V-type proton ATPase subunit d 1

      See identical proteins and their annotated locations for XP_001497719.1

      UniProtKB/TrEMBL
      A0A9L0R7W8
      Related
      ENSECAP00000013371.2, ENSECAT00000016558.3
      Conserved Domains (2) summary
      COG1527
      Location:14 → 350
      NtpC; Archaeal/vacuolar-type H+-ATPase subunit C/Vma6 [Energy production and conversion]
      pfam01992
      Location:16 → 345
      vATP-synt_AC39; ATP synthase (C/AC39) subunit
    Nucleotide Protein
    Heading Accession and Version

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    Molecular Biology Databases
    Research Materials