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    LMOD3 leiomodin 3 [ Equus caballus (horse) ]

    Gene ID: 100053299, updated on 17-Aug-2024

    Summary

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    Official Symbol
    LMOD3provided by VGNC
    Official Full Name
    leiomodin 3provided by VGNC
    Primary source
    VGNC:VGNC:19715
    See related
    Ensembl:ENSECAG00000008709
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See LMOD3 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 16 NC_009159.3 (22282767..22295694)

    Chromosome 16 - NC_009159.3Genomic Context describing neighboring genes Neighboring gene melanocyte inducing transcription factor Neighboring gene uncharacterized LOC106781772 Neighboring gene FERM domain containing 4B Neighboring gene ADP ribosylation factor like GTPase 6 interacting protein 5 Neighboring gene ubiquitin like modifier activating enzyme 3 Neighboring gene TATA element modulatory factor 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009159.3 Chromosome 16 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tropomyosin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in muscle contraction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in myofibril assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pointed-end actin filament capping IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in myofibril IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in striated muscle thin filament IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leiomodin-3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009159.3 Reference EquCab3.0 Primary Assembly

      Range
      22282767..22295694
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023620094.1 → XP_023475862.1  leiomodin-3

      UniProtKB/TrEMBL
      A0A3Q2I5W3, F6UIX7
      Related
      ENSECAP00000006660.2, ENSECAT00000008838.3
      Conserved Domains (2) summary
      pfam03250
      Location:16 → 125
      Tropomodulin; Tropomodulin
      cl26161
      Location:261 → 352
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

    2. XM_001498577.4 → XP_001498627.1  leiomodin-3

      See identical proteins and their annotated locations for XP_001498627.1

      UniProtKB/TrEMBL
      A0A3Q2I5W3, F6UIX7
      Conserved Domains (2) summary
      pfam03250
      Location:16 → 125
      Tropomodulin; Tropomodulin
      cl26161
      Location:261 → 352
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    Nucleotide Protein
    Heading Accession and Version

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