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    SLC6A9 solute carrier family 6 member 9 [ Equus caballus (horse) ]

    Gene ID: 100053016, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SLC6A9provided by VGNC
    Official Full Name
    solute carrier family 6 member 9provided by VGNC
    Primary source
    VGNC:VGNC:23264
    See related
    Ensembl:ENSECAG00000002225
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See SLC6A9 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 2 NC_009145.3 (14357830..14389118)

    Chromosome 2 - NC_009145.3Genomic Context describing neighboring genes Neighboring gene KLF transcription factor 18 Neighboring gene KLF transcription factor 17 Neighboring gene U6 spliceosomal RNA Neighboring gene coiled-coil domain containing 24 Neighboring gene beta-1,4-galactosyltransferase 2 Neighboring gene ATPase H+ transporting V0 subunit b

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009145.3 Chromosome 2 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycine:sodium symporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glycine import across plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neurotransmitter transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sodium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synaptic transmission, glycinergic IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sodium- and chloride-dependent glycine transporter 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009145.3 Reference EquCab3.0 Primary Assembly

      Range
      14357830..14389118
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005607116.3 → XP_005607173.1  sodium- and chloride-dependent glycine transporter 1 isoform X3

      UniProtKB/TrEMBL
      F7CIM7
      Related
      ENSECAP00000003885.3, ENSECAT00000005514.3
      Conserved Domains (1) summary
      cd11498
      Location:11 → 594
      SLC6sbd_GlyT1; Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain

    2. XM_023631536.1 → XP_023487304.1  sodium- and chloride-dependent glycine transporter 1 isoform X6

      UniProtKB/TrEMBL
      A0A3Q2I3K0
      Conserved Domains (1) summary
      cl00456
      Location:26 → 556
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    3. XM_014737477.2 → XP_014592963.2  sodium- and chloride-dependent glycine transporter 1 isoform X2

      UniProtKB/TrEMBL
      A0A3Q2HQL6, F7CIM7
      Related
      ENSECAP00000037229.2, ENSECAT00000035955.3
      Conserved Domains (1) summary
      cd11498
      Location:73 → 656
      SLC6sbd_GlyT1; Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain

    4. XM_023631525.1 → XP_023487293.1  sodium- and chloride-dependent glycine transporter 1 isoform X3

      UniProtKB/TrEMBL
      F7CIM7
      Conserved Domains (1) summary
      cd11498
      Location:11 → 594
      SLC6sbd_GlyT1; Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain

    5. XM_014737476.2 → XP_014592962.1  sodium- and chloride-dependent glycine transporter 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2I3K0
      Related
      ENSECAP00000003659.2, ENSECAT00000005216.4
      Conserved Domains (1) summary
      cd11498
      Location:16 → 599
      SLC6sbd_GlyT1; Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain

    6. XM_023631535.1 → XP_023487303.1  sodium- and chloride-dependent glycine transporter 1 isoform X5

      UniProtKB/TrEMBL
      A0A3Q2I3K0
      Conserved Domains (1) summary
      cl00456
      Location:57 → 587
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    7. XM_023631531.1 → XP_023487299.1  sodium- and chloride-dependent glycine transporter 1 isoform X4

      UniProtKB/TrEMBL
      A0A3Q2I3K0
      Related
      ENSECAP00000042434.2, ENSECAT00000038994.3
      Conserved Domains (1) summary
      cd11498
      Location:8 → 591
      SLC6sbd_GlyT1; Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain

    8. XM_023631539.1 → XP_023487307.1  sodium- and chloride-dependent glycine transporter 1 isoform X7

      UniProtKB/TrEMBL
      A0A3Q2I3K0
      Conserved Domains (1) summary
      cl00456
      Location:1 → 529
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
    Nucleotide Protein
    Heading Accession and Version

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