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    B4GALT6 beta-1,4-galactosyltransferase 6 [ Equus caballus (horse) ]

    Gene ID: 100052209, updated on 17-Aug-2024

    Summary

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    Official Symbol
    B4GALT6provided by VGNC
    Official Full Name
    beta-1,4-galactosyltransferase 6provided by VGNC
    Primary source
    VGNC:VGNC:15744
    See related
    Ensembl:ENSECAG00000017478
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See B4GALT6 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 8 NC_009151.3 (55895638..55975005, complement)

    Chromosome 8 - NC_009151.3Genomic Context describing neighboring genes Neighboring gene desmoglein 2 Neighboring gene transthyretin Neighboring gene uncharacterized LOC102150113 Neighboring gene trafficking protein particle complex subunit 8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009151.3 Chromosome 8 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    beta-1,4-galactosyltransferase 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009151.3 Reference EquCab3.0 Primary Assembly

      Range
      55895638..55975005 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005612819.3 → XP_005612876.2  beta-1,4-galactosyltransferase 6 isoform X2

      UniProtKB/TrEMBL
      A0A3Q2GWL6, A0A9L0R4Q9
      Related
      ENSECAP00000024871.1, ENSECAT00000055143.3
      Conserved Domains (1) summary
      cd00899
      Location:155 → 372
      b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

    2. XM_001495247.5 → XP_001495297.3  beta-1,4-galactosyltransferase 6 isoform X1

      UniProtKB/TrEMBL
      A0A5F5PWW2, A0A5F5PX46, A0A9L0SC71, F6SXG4
      Related
      ENSECAP00000052355.2, ENSECAT00000067868.2
      Conserved Domains (1) summary
      cd00899
      Location:155 → 371
      b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids
    Nucleotide Protein
    Heading Accession and Version

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