U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LMOD1 leiomodin 1 [ Equus caballus (horse) ]

    Gene ID: 100052019, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    LMOD1provided by VGNC
    Official Full Name
    leiomodin 1provided by VGNC
    Primary source
    VGNC:VGNC:19713
    See related
    Ensembl:ENSECAG00000021583
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LMOD1 in Genome Data Viewer
    Location:
    chromosome: 30
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 30 NC_009173.3 (30195377..30229589, complement)

    Chromosome 30 - NC_009173.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111771304 Neighboring gene importin 9 Neighboring gene shisa family member 4 Neighboring gene translocase of inner mitochondrial membrane 17A Neighboring gene arginyl aminopeptidase

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_009173.3 Chromosome 30 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tropomyosin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in muscle contraction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in myofibril assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pointed-end actin filament capping IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in myofibril IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in striated muscle thin filament IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    leiomodin-1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009173.3 Reference EquCab3.0 Primary Assembly

      Range
      30195377..30229589 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001495117.5 → XP_001495167.1  leiomodin-1

      UniProtKB/TrEMBL
      A0A9L0RM97
      Related
      ENSECAP00000019005.2, ENSECAT00000022970.3
      Conserved Domains (2) summary
      cd00116
      Location:295 → 426
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      pfam03250
      Location:7 → 83
      Tropomodulin; Tropomodulin
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials