U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    RERE arginine-glutamic acid dipeptide repeats [ Equus caballus (horse) ]

    Gene ID: 100051942, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    REREprovided by VGNC
    Official Full Name
    arginine-glutamic acid dipeptide repeatsprovided by VGNC
    Primary source
    VGNC:VGNC:22305
    See related
    Ensembl:ENSECAG00000008638
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See RERE in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 2 NC_009145.3 (42407706..42810471)

    Chromosome 2 - NC_009145.3Genomic Context describing neighboring genes Neighboring gene translation initiation factor IF-2 Neighboring gene uncharacterized LOC111772459 Neighboring gene enolase 1 Neighboring gene uncharacterized LOC111772460 Neighboring gene solute carrier family 45 member 1 Neighboring gene uncharacterized LOC106782825

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_009145.3 Chromosome 2 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    arginine-glutamic acid dipeptide repeats protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009145.3 Reference EquCab3.0 Primary Assembly

      Range
      42407706..42810471
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023635850.1 → XP_023491618.1  arginine-glutamic acid dipeptide repeats protein isoform X1

      UniProtKB/TrEMBL
      F6Q1S6
      Conserved Domains (5) summary
      cd11661
      Location:395 → 440
      SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
      smart00401
      Location:503 → 552
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
      cd04709
      Location:102 → 307
      BAH_MTA; BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH ...
      pfam01448
      Location:286 → 336
      ELM2; ELM2 domain
      cl26464
      Location:568 → 1548
      Atrophin-1; Atrophin-1 family

    2. XM_023635852.1 → XP_023491620.1  arginine-glutamic acid dipeptide repeats protein isoform X1

      UniProtKB/TrEMBL
      F6Q1S6
      Conserved Domains (5) summary
      cd11661
      Location:395 → 440
      SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
      smart00401
      Location:503 → 552
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
      cd04709
      Location:102 → 307
      BAH_MTA; BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH ...
      pfam01448
      Location:286 → 336
      ELM2; ELM2 domain
      cl26464
      Location:568 → 1548
      Atrophin-1; Atrophin-1 family

    3. XM_023635851.1 → XP_023491619.1  arginine-glutamic acid dipeptide repeats protein isoform X1

      UniProtKB/TrEMBL
      F6Q1S6
      Related
      ENSECAP00000006983.2, ENSECAT00000009209.4
      Conserved Domains (5) summary
      cd11661
      Location:395 → 440
      SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
      smart00401
      Location:503 → 552
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
      cd04709
      Location:102 → 307
      BAH_MTA; BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH ...
      pfam01448
      Location:286 → 336
      ELM2; ELM2 domain
      cl26464
      Location:568 → 1548
      Atrophin-1; Atrophin-1 family

    4. XM_014737639.2 → XP_014593125.2  arginine-glutamic acid dipeptide repeats protein isoform X1

      UniProtKB/TrEMBL
      F6Q1S6
      Conserved Domains (5) summary
      cd11661
      Location:395 → 440
      SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
      smart00401
      Location:503 → 552
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
      cd04709
      Location:102 → 307
      BAH_MTA; BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH ...
      pfam01448
      Location:286 → 336
      ELM2; ELM2 domain
      cl26464
      Location:568 → 1548
      Atrophin-1; Atrophin-1 family

    5. XM_023635853.1 → XP_023491621.1  arginine-glutamic acid dipeptide repeats protein isoform X2

      UniProtKB/TrEMBL
      A0A3Q2IBF9, F6Q1S6
      Related
      ENSECAP00000045637.2, ENSECAT00000046369.3
      Conserved Domains (5) summary
      cd11661
      Location:353 → 398
      SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
      smart00401
      Location:461 → 510
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
      cd04709
      Location:102 → 265
      BAH_MTA; BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH ...
      pfam01448
      Location:244 → 294
      ELM2; ELM2 domain
      cl26464
      Location:526 → 1506
      Atrophin-1; Atrophin-1 family

    6. XM_023635854.1 → XP_023491622.1  arginine-glutamic acid dipeptide repeats protein isoform X3

      UniProtKB/TrEMBL
      A0A3Q2IBZ1
      Related
      ENSECAP00000045164.2, ENSECAT00000063136.3
      Conserved Domains (4) summary
      cd11661
      Location:127 → 172
      SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
      smart00401
      Location:235 → 284
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
      pfam01448
      Location:18 → 68
      ELM2; ELM2 domain
      cl26464
      Location:300 → 1280
      Atrophin-1; Atrophin-1 family

    7. XM_023635855.1 → XP_023491623.1  arginine-glutamic acid dipeptide repeats protein isoform X4

      Conserved Domains (3) summary
      cd11661
      Location:77 → 122
      SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
      smart00401
      Location:185 → 234
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
      cl26464
      Location:250 → 1230
      Atrophin-1; Atrophin-1 family

    8. XM_023635857.1 → XP_023491625.1  arginine-glutamic acid dipeptide repeats protein isoform X5

      Conserved Domains (1) summary
      cl26464
      Location:14 → 994
      Atrophin-1; Atrophin-1 family

    9. XM_023635856.1 → XP_023491624.1  arginine-glutamic acid dipeptide repeats protein isoform X5

      Conserved Domains (1) summary
      cl26464
      Location:14 → 994
      Atrophin-1; Atrophin-1 family
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials