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    LHX9 LIM homeobox 9 [ Equus caballus (horse) ]

    Gene ID: 100051569, updated on 17-Aug-2024

    Summary

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    Official Symbol
    LHX9provided by VGNC
    Official Full Name
    LIM homeobox 9provided by VGNC
    Primary source
    VGNC:VGNC:19660
    See related
    Ensembl:ENSECAG00000008579
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See LHX9 in Genome Data Viewer
    Location:
    chromosome: 30
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 30 NC_009173.3 (26888568..26904339)

    Chromosome 30 - NC_009173.3Genomic Context describing neighboring genes Neighboring gene iron-sulfur cluster assembly enzyme ISCU, mitochondrial pseudogene Neighboring gene DENN domain containing 1B Neighboring gene chromosome 30 C1orf53 homolog Neighboring gene uncharacterized LOC111771323 Neighboring gene proteasome subunit beta type-3 pseudogene

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009173.3 Chromosome 30 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in neuron differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LIM/homeobox protein Lhx9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009173.3 Reference EquCab3.0 Primary Assembly

      Range
      26888568..26904339
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005608039.3 → XP_005608096.1  LIM/homeobox protein Lhx9 isoform X1

      See identical proteins and their annotated locations for XP_005608096.1

      UniProtKB/TrEMBL
      A0A9L0RKW9
      Related
      ENSECAP00000064561.1, ENSECAT00000103789.1
      Conserved Domains (3) summary
      cd09377
      Location:129 → 187
      LIM2_Lhx2_Lhx9; The second LIM domain of Lhx2 and Lhx9 family
      cd09469
      Location:61 → 124
      LIM1_Lhx2; The first LIM domain of Lhx2
      pfam00046
      Location:271 → 324
      Homeobox; Homeobox domain

    2. XM_005608040.3 → XP_005608097.1  LIM/homeobox protein Lhx9 isoform X2

      See identical proteins and their annotated locations for XP_005608097.1

      UniProtKB/TrEMBL
      A0A3Q2GW84
      Related
      ENSECAP00000025078.2, ENSECAT00000059578.2
      Conserved Domains (3) summary
      cd09377
      Location:129 → 187
      LIM2_Lhx2_Lhx9; The second LIM domain of Lhx2 and Lhx9 family
      cd09469
      Location:61 → 124
      LIM1_Lhx2; The first LIM domain of Lhx2
      smart00389
      Location:267 → 312
      HOX; Homeodomain

    RNA

    1. XR_002805075.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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    Molecular Biology Databases
    Research Materials