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    NUP50 nucleoporin 50 [ Equus caballus (horse) ]

    Gene ID: 100051494, updated on 17-Aug-2024

    Summary

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    Official Symbol
    NUP50provided by VGNC
    Official Full Name
    nucleoporin 50provided by VGNC
    Primary source
    VGNC:VGNC:20971
    See related
    Ensembl:ENSECAG00000016276
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See NUP50 in Genome Data Viewer
    Location:
    chromosome: 28
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 28 NC_009171.3 (42297729..42317564)

    Chromosome 28 - NC_009171.3Genomic Context describing neighboring genes Neighboring gene PHD finger protein 21B Neighboring gene uncharacterized LOC111771045 Neighboring gene uncharacterized LOC111771025 Neighboring gene KIAA0930 Neighboring gene microRNA mir-1249 Neighboring gene uncharacterized LOC102148390

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009171.3 Chromosome 28 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear pore complex protein Nup50
    Names
    Nucleoporin 50 kDa-like protein
    nuclear pore complex protein nup50-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001309318.1 → NP_001296247.1  nuclear pore complex protein Nup50

      See identical proteins and their annotated locations for NP_001296247.1

      Status: VALIDATED

      Source sequence(s)
      PJAA01000029
      UniProtKB/TrEMBL
      A0A5F5PZ53
      Conserved Domains (2) summary
      cd13170
      Location:351 → 467
      RanBD_NUP50; Nucleoporin 50 Ran-binding domain
      pfam08911
      Location:3 → 64
      NUP50; NUP50 (Nucleoporin 50 kDa)

    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009171.3 Reference EquCab3.0 Primary Assembly

      Range
      42297729..42317564
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023630997.1 → XP_023486765.1  nuclear pore complex protein Nup50 isoform X1

      UniProtKB/TrEMBL
      A0A5F5PZ53
      Related
      ENSECAP00000053032.2, ENSECAT00000073479.2
      Conserved Domains (2) summary
      cd13170
      Location:351 → 467
      RanBD_NUP50; Nucleoporin 50 Ran-binding domain
      pfam08911
      Location:3 → 64
      NUP50; NUP50 (Nucleoporin 50 kDa)

    2. XM_005606773.2 → XP_005606830.1  nuclear pore complex protein Nup50 isoform X1

      See identical proteins and their annotated locations for XP_005606830.1

      UniProtKB/TrEMBL
      A0A5F5PZ53
      Related
      ENSECAP00000057132.1, ENSECAT00000136644.1
      Conserved Domains (2) summary
      cd13170
      Location:351 → 467
      RanBD_NUP50; Nucleoporin 50 Ran-binding domain
      pfam08911
      Location:3 → 64
      NUP50; NUP50 (Nucleoporin 50 kDa)
    Nucleotide Protein
    Heading Accession and Version

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