U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    CDX2 caudal type homeobox 2 [ Equus caballus (horse) ]

    Gene ID: 100051406, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CDX2provided by VGNC
    Official Full Name
    caudal type homeobox 2provided by VGNC
    Primary source
    VGNC:VGNC:51937
    See related
    Ensembl:ENSECAG00000027754
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CDX2 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 17 NC_009160.3 (7737882..7744381, complement)

    Chromosome 17 - NC_009160.3Genomic Context describing neighboring genes Neighboring gene GS homeobox 1 Neighboring gene pancreatic and duodenal homeobox 1 Neighboring gene ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase Neighboring gene fms related receptor tyrosine kinase 3 Neighboring gene 40S ribosomal protein SA pseudogene

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_009160.3 Chromosome 17 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in animal organ morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in anterior/posterior axis specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in embryo development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    homeobox protein CDX-2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009160.3 Reference EquCab3.0 Primary Assembly

      Range
      7737882..7744381 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023621445.1 → XP_023477213.1  homeobox protein CDX-2 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2HTY4
      Related
      ENSECAP00000037698.1, ENSECAT00000048120.2
      Conserved Domains (2) summary
      pfam00046
      Location:188 → 240
      Homeobox; Homeobox domain
      pfam04731
      Location:13 → 169
      Caudal_act; Caudal like protein activation region

    2. XM_023621447.1 → XP_023477215.1  homeobox protein CDX-2 isoform X2

      Conserved Domains (2) summary
      pfam00046
      Location:188 → 226
      Homeobox; Homeobox domain
      pfam04731
      Location:13 → 169
      Caudal_act; Caudal like protein activation region
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials