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    PPP1R10 protein phosphatase 1 regulatory subunit 10 [ Equus caballus (horse) ]

    Gene ID: 100051304, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PPP1R10provided by VGNC
    Official Full Name
    protein phosphatase 1 regulatory subunit 10provided by VGNC
    Primary source
    VGNC:VGNC:21753
    See related
    Ensembl:ENSECAG00000010033
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See PPP1R10 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 20 NC_009163.3 (30562908..30581678, complement)

    Chromosome 20 - NC_009163.3Genomic Context describing neighboring genes Neighboring gene proline rich 3 Neighboring gene ATP binding cassette subfamily F member 1 Neighboring gene mitochondrial ribosomal protein S18B Neighboring gene alpha tubulin acetyltransferase 1 Neighboring gene chromosome 20 C6orf136 homolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009163.3 Chromosome 20 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein phosphatase 1 binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of PTW/PP1 phosphatase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/threonine-protein phosphatase 1 regulatory subunit 10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009163.3 Reference EquCab3.0 Primary Assembly

      Range
      30562908..30581678 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023624177.1 → XP_023479945.1  serine/threonine-protein phosphatase 1 regulatory subunit 10 isoform X1

      UniProtKB/TrEMBL
      A0A9L0T190, F6SVD1
      Conserved Domains (2) summary
      pfam18044
      Location:933 → 955
      zf-CCCH_4; CCCH-type zinc finger
      cl00146
      Location:102 → 146
      TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme

    2. XM_023624176.1 → XP_023479944.1  serine/threonine-protein phosphatase 1 regulatory subunit 10 isoform X1

      UniProtKB/TrEMBL
      A0A9L0T190, F6SVD1
      Conserved Domains (2) summary
      pfam18044
      Location:933 → 955
      zf-CCCH_4; CCCH-type zinc finger
      cl00146
      Location:102 → 146
      TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme

    3. XM_023624178.1 → XP_023479946.1  serine/threonine-protein phosphatase 1 regulatory subunit 10 isoform X1

      UniProtKB/TrEMBL
      A0A9L0T190, F6SVD1
      Conserved Domains (2) summary
      pfam18044
      Location:933 → 955
      zf-CCCH_4; CCCH-type zinc finger
      cl00146
      Location:102 → 146
      TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme

    4. XM_023624174.1 → XP_023479942.1  serine/threonine-protein phosphatase 1 regulatory subunit 10 isoform X1

      UniProtKB/TrEMBL
      A0A9L0T190, F6SVD1
      Conserved Domains (2) summary
      pfam18044
      Location:933 → 955
      zf-CCCH_4; CCCH-type zinc finger
      cl00146
      Location:102 → 146
      TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme

    5. XM_023624179.1 → XP_023479947.1  serine/threonine-protein phosphatase 1 regulatory subunit 10 isoform X2

      UniProtKB/TrEMBL
      A0A9L0T190
      Related
      ENSECAP00000080959.1, ENSECAT00000137348.1
      Conserved Domains (2) summary
      pfam18044
      Location:928 → 950
      zf-CCCH_4; CCCH-type zinc finger
      cl00146
      Location:102 → 146
      TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme

    6. XM_023624175.1 → XP_023479943.1  serine/threonine-protein phosphatase 1 regulatory subunit 10 isoform X1

      UniProtKB/TrEMBL
      A0A9L0T190, F6SVD1
      Related
      ENSECAP00000008420.3, ENSECAT00000010858.3
      Conserved Domains (2) summary
      pfam18044
      Location:933 → 955
      zf-CCCH_4; CCCH-type zinc finger
      cl00146
      Location:102 → 146
      TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
    Nucleotide Protein
    Heading Accession and Version

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