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    RO60 Ro60, Y RNA binding protein [ Equus caballus (horse) ]

    Gene ID: 100051140, updated on 17-Aug-2024

    Summary

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    Official Symbol
    RO60provided by VGNC
    Official Full Name
    Ro60, Y RNA binding proteinprovided by VGNC
    Primary source
    VGNC:VGNC:24547
    See related
    Ensembl:ENSECAG00000018653
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Also known as
    TROVE2
    Orthologs
    human mouse all
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    Genomic context

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    See RO60 in Genome Data Viewer
    Location:
    chromosome: 30
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 30 NC_009173.3 (22440412..22466127)

    Chromosome 30 - NC_009173.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102148783 Neighboring gene ubiquitin C-terminal hydrolase L5 Neighboring gene uncharacterized LOC111771321 Neighboring gene glutaredoxin 2 Neighboring gene cell division cycle 73 Neighboring gene beta-1,3-galactosyltransferase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009173.3 Chromosome 30 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA-binding protein RO60
    Names
    60 kDa SS-A/Ro ribonucleoprotein-like protein
    TROVE domain family member 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009173.3 Reference EquCab3.0 Primary Assembly

      Range
      22440412..22466127
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001490824.4 → XP_001490874.1  RNA-binding protein RO60 isoform X1

      See identical proteins and their annotated locations for XP_001490874.1

      UniProtKB/TrEMBL
      A0A9L0SRH8, F7AA69
      Related
      ENSECAP00000016412.1, ENSECAT00000020013.3
      Conserved Domains (2) summary
      pfam05731
      Location:17 → 369
      TROVE; TROVE domain
      pfam13519
      Location:370 → 505
      VWA_2; von Willebrand factor type A domain

    2. XM_023632613.1 → XP_023488381.1  RNA-binding protein RO60 isoform X2

      Conserved Domains (2) summary
      COG2425
      Location:75 → 196
      ViaA; Uncharacterized protein, contains a von Willebrand factor type A (vWA) domain [Function unknown]
      pfam05731
      Location:1 → 94
      TROVE; TROVE domain
    Nucleotide Protein
    Heading Accession and Version

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