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    CLRN1 clarin 1 [ Equus caballus (horse) ]

    Gene ID: 100050427, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CLRN1provided by VGNC
    Official Full Name
    clarin 1provided by VGNC
    Primary source
    VGNC:VGNC:56844
    See related
    Ensembl:ENSECAG00000000748
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See CLRN1 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 16 NC_009159.3 (85027579..85066440, complement)

    Chromosome 16 - NC_009159.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111768452 Neighboring gene siah E3 ubiquitin protein ligase 2 Neighboring gene MINDY family member 4B Neighboring gene mediator complex subunit 12L Neighboring gene G protein-coupled receptor 171 Neighboring gene purinergic receptor P2Y14

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009159.3 Chromosome 16 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in equilibrioception IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sensory perception of sound IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    clarin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009159.3 Reference EquCab3.0 Primary Assembly

      Range
      85027579..85066440 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001489624.3 → XP_001489674.1  clarin-1

      See identical proteins and their annotated locations for XP_001489674.1

      UniProtKB/TrEMBL
      A0A9L0TNK1
      Related
      ENSECAP00000089840.1, ENSECAT00000093241.1
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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