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    CHORDC1 cysteine and histidine rich domain containing 1 [ Equus caballus (horse) ]

    Gene ID: 100050120, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CHORDC1provided by VGNC
    Official Full Name
    cysteine and histidine rich domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:16512
    See related
    Ensembl:ENSECAG00000035152
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
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    Genomic context

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    See CHORDC1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) Unplaced Scaffold NW_019643376.1 (65392..86259)

    NW_019643376.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC106783433 Neighboring gene N-acetylated-alpha-linked acidic dipeptidase 2-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019643376 Unplaced Scaffold Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in centrosome duplication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cysteine and histidine-rich domain-containing protein 1
    Names
    cysteine and histidine-rich domain (CHORD) containing 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NW_019643376.1 Reference EquCab3.0 Primary Assembly

      Range
      65392..86259
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005611976.3 → XP_005612033.1  cysteine and histidine-rich domain-containing protein 1 isoform X2

      See identical proteins and their annotated locations for XP_005612033.1

      UniProtKB/TrEMBL
      A0A9L0TCZ6
      Conserved Domains (2) summary
      cd06488
      Location:229 → 315
      p23_melusin_like; p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta ...
      pfam04968
      Location:3 → 64
      CHORD; CHORD

    2. XM_001488653.5 → XP_001488703.1  cysteine and histidine-rich domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_001488703.1

      UniProtKB/TrEMBL
      A0A9L0TCZ6, F6XZX6
      Related
      ENSECAP00000025415.1, ENSECAT00000047063.2
      Conserved Domains (2) summary
      cd06488
      Location:230 → 316
      p23_melusin_like; p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta ...
      pfam04968
      Location:3 → 64
      CHORD; CHORD
    Nucleotide Protein
    Heading Accession and Version

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