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    ST6GALNAC1 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 100049002, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ST6GALNAC1provided by VGNC
    Official Full Name
    ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1provided by VGNC
    Primary source
    VGNC:VGNC:46858
    See related
    Ensembl:ENSCAFG00845016785
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human all
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    Genomic context

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    See ST6GALNAC1 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 9 NC_051813.1 (4774895..4800385)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 9 NC_006591.4 (4782442..4805244)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 9 NC_049230.1 (5003369..5026130)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 9 NC_049269.1 (4802574..4825137)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 9 NC_049750.1 (4922238..4945012)

    Chromosome 9 - NC_051813.1Genomic Context describing neighboring genes Neighboring gene matrix remodeling associated 7 Neighboring gene uncharacterized LOC119873220 Neighboring gene uncharacterized LOC111097288 Neighboring gene uncharacterized LOC119873221 Neighboring gene ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Linkage disequilibrium mapping in domestic dog breeds narrows the progressive rod-cone degeneration interval and identifies ancestral disease-transmitting chromosome. Goldstein O, et al. Genomics, 2006 Nov. PMID 16859891, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1
    Names
    ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1
    NP_001091025.1
    XP_038530805.1
    XP_038530807.1
    XP_038530808.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001097556.1 → NP_001091025.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1

      See identical proteins and their annotated locations for NP_001091025.1

      Status: PROVISIONAL

      Source sequence(s)
      DQ336165
      UniProtKB/TrEMBL
      A0A8P0N7Y6, Q00M93
      Conserved Domains (2) summary
      PHA03247
      Location:49 → 263
      PHA03247; large tegument protein UL36; Provisional
      pfam00777
      Location:294 → 580
      Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051813.1 Reference ROS_Cfam_1.0

      Range
      4774895..4800385
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038674879.1 → XP_038530807.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0M1R1, A0A8I3S2B0, A0A8P0T1Y3
      Related
      ENSCAFP00845023368.1, ENSCAFT00845029752.1
      Conserved Domains (2) summary
      PRK07003
      Location:61 → 244
      PRK07003; DNA polymerase III subunit gamma/tau
      pfam00777
      Location:294 → 574
      Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

    2. XM_038674877.1 → XP_038530805.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0M1R1, A0A8I3S2B0, A0A8P0T1Y3
      Conserved Domains (2) summary
      PRK07003
      Location:61 → 244
      PRK07003; DNA polymerase III subunit gamma/tau
      pfam00777
      Location:294 → 574
      Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

    3. XM_038674880.1 → XP_038530808.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 isoform X2

      UniProtKB/TrEMBL
      A0A8P0N7Y6, Q00M93
      Conserved Domains (2) summary
      PHA03247
      Location:49 → 263
      PHA03247; large tegument protein UL36; Provisional
      pfam00777
      Location:294 → 580
      Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049269.1 Alternate UMICH_Zoey_3.1

      Range
      4802574..4825137
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049750.1 Alternate UNSW_CanFamBas_1.0

      Range
      4922238..4945012
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049230.1 Alternate UU_Cfam_GSD_1.0

      Range
      5003369..5026130
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006591.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      4782442..4805244
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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