U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    C9 complement C9 [ Sus scrofa (pig) ]

    Gene ID: 100037951, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    C9provided by VGNC
    Official Full Name
    complement C9provided by VGNC
    Primary source
    VGNC:VGNC:86083
    See related
    Ensembl:ENSSSCG00000016856
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Biased expression in liver (RPKM 329.7) and mixtures (RPKM 115.5) See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 16
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 16 NC_010458.4 (24521318..24575939, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 16 NC_010458.3 (25800236..25823336, complement)

    Chromosome 16 - NC_010458.4Genomic Context describing neighboring genes Neighboring gene collagen alpha-2(I) chain-like Neighboring gene uncharacterized LOC110257226 Neighboring gene FYN binding protein 1 Neighboring gene DAB adaptor protein 2 Neighboring gene uncharacterized LOC102163534 Neighboring gene uncharacterized LOC106506472

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of membrane attack complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    complement component C9

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001097448.1 → NP_001090917.1  complement component C9 precursor

      See identical proteins and their annotated locations for NP_001090917.1

      Status: PROVISIONAL

      Source sequence(s)
      DQ333198
      UniProtKB/TrEMBL
      A0SEG9, F1SMJ6
      Related
      ENSSSCP00000075601.1, ENSSSCT00000093736.1
      Conserved Domains (4) summary
      smart00209
      Location:45 → 95
      TSP1; Thrombospondin type 1 repeats
      smart00457
      Location:298 → 507
      MACPF; membrane-attack complex / perforin
      cd00112
      Location:101 → 134
      LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
      cl06123
      Location:147 → 269
      DHR2_DOCK; Dock Homology Region 2, a GEF domain, of Dedicator of Cytokinesis proteins

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010458.4 Reference Sscrofa11.1 Primary Assembly

      Range
      24521318..24575939 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials