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    RFX3 regulatory factor X3 [ Oryctolagus cuniculus (rabbit) ]

    Gene ID: 100009410, updated on 10-Oct-2024

    Summary

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    Gene symbol
    RFX3
    Gene description
    regulatory factor X3
    See related
    Ensembl:ENSOCUG00000014086
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryctolagus cuniculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
    Also known as
    Rfx2
    Orthologs
    human mouse all
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    Genomic context

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    See RFX3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 1 NC_067374.1 (64930194..65274087)

    Chromosome 1 - NC_067374.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S11-like Neighboring gene uncharacterized LOC127491121 Neighboring gene Y-box-binding protein 1-like Neighboring gene uncharacterized LOC127485352 Neighboring gene RNA-binding protein 7-like Neighboring gene histone-arginine methyltransferase CARM1 Neighboring gene FACT complex subunit SPT16-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_067374.1 Chromosome 1 Reference UM_NZW_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor RFX3
    Names
    regulatory factor X 3
    regulatory factor X, 3 (influences HLA class II expression)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UM_NZW_1.0 Primary Assembly

    Genomic

    1. NC_067374.1 Reference UM_NZW_1.0 Primary Assembly

      Range
      64930194..65274087
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_051846158.1 → XP_051702118.1  transcription factor RFX3 isoform X2

    2. XM_051846170.1 → XP_051702130.1  transcription factor RFX3 isoform X2

    3. XM_051846174.1 → XP_051702134.1  transcription factor RFX3 isoform X2

    4. XM_051846178.1 → XP_051702138.1  transcription factor RFX3 isoform X2

    5. XM_051846183.1 → XP_051702143.1  transcription factor RFX3 isoform X2

    6. XM_051846162.1 → XP_051702122.1  transcription factor RFX3 isoform X2

    7. XM_051846155.1 → XP_051702115.1  transcription factor RFX3 isoform X2

    8. XM_051846182.1 → XP_051702142.1  transcription factor RFX3 isoform X2

    9. XM_051846152.1 → XP_051702112.1  transcription factor RFX3 isoform X1

      UniProtKB/TrEMBL
      G1T6P7

    10. XM_051846185.1 → XP_051702145.1  transcription factor RFX3 isoform X3

    11. XM_051846187.1 → XP_051702147.1  transcription factor RFX3 isoform X4

    Nucleotide Protein
    Heading Accession and Version

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