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    RHO rhodopsin [ Oryctolagus cuniculus (rabbit) ]

    Gene ID: 100009200, updated on 8-Mar-2024

    Summary

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    Gene symbol
    RHO
    Gene description
    rhodopsin
    See related
    Ensembl:ENSOCUG00000013036
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Oryctolagus cuniculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
    Orthologs
    human mouse all
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    Genomic context

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    See RHO in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 9 NC_067382.1 (105028339..105039669)

    Chromosome 9 - NC_067382.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103349180 Neighboring gene EF-hand calcium binding domain 12 Neighboring gene methyl-CpG binding domain 4, DNA glycosylase Neighboring gene intraflagellar transport 122 Neighboring gene histone H1.8 Neighboring gene plexin D1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_067382.1 Chromosome 9 Reference UM_NZW_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The deduced amino-acid sequence of opsin from rabbit rod photoreceptors. Smith WC, et al. Gene, 1995 Sep 11. PMID 7557454
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables G protein-coupled receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phototransduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in visual perception IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in photoreceptor outer segment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    rhodopsin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001082349.1 → NP_001075818.1  rhodopsin

      See identical proteins and their annotated locations for NP_001075818.1

      Status: PROVISIONAL

      Source sequence(s)
      U21688
      UniProtKB/Swiss-Prot
      P49912
      Conserved Domains (3) summary
      pfam00001
      Location:55 → 306
      7tm_1; 7 transmembrane receptor (rhodopsin family)
      pfam10413
      Location:2 → 37
      Rhodopsin_N; Amino terminal of the G-protein receptor rhodopsin
      cl21561
      Location:45 → 323
      7tm_4; Olfactory receptor

    RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UM_NZW_1.0 Primary Assembly

    Genomic

    1. NC_067382.1 Reference UM_NZW_1.0 Primary Assembly

      Range
      105028339..105039669
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008260202.3 → XP_008258424.1  rhodopsin isoform X1

      UniProtKB/TrEMBL
      A0A5S8HJ78
      Related
      ENSOCUP00000011220.3
      Conserved Domains (3) summary
      pfam00001
      Location:62 → 313
      7tm_1; 7 transmembrane receptor (rhodopsin family)
      pfam10413
      Location:24 → 44
      Rhodopsin_N; Amino terminal of the G-protein receptor rhodopsin
      cl21561
      Location:52 → 330
      7tm_4; Olfactory receptor
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P49912.1 GenPept UniProtKB/Swiss-Prot:P49912

    Gene LinkOut

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