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    HTR3B 5-hydroxytryptamine receptor 3B [ Oryctolagus cuniculus (rabbit) ]

    Gene ID: 100008789, updated on 8-Mar-2024

    Summary

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    Gene symbol
    HTR3B
    Gene description
    5-hydroxytryptamine receptor 3B
    See related
    Ensembl:ENSOCUG00000029643
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryctolagus cuniculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
    Orthologs
    human mouse all
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    Genomic context

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    See HTR3B in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 1 NC_067374.1 (116413081..116473770, complement)

    Chromosome 1 - NC_067374.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC127483179 Neighboring gene uncharacterized LOC103349312 Neighboring gene 5-hydroxytryptamine receptor 3A Neighboring gene ubiquitin specific peptidase 28 Neighboring gene claudin 25 Neighboring gene zw10 kinetochore protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_067374.1 Chromosome 1 Reference UM_NZW_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of 5-HT(3A) and 5-HT(3B) receptor subunits in mammalian retinae: potential pre-synaptic modulators of photoreceptors. Pootanakit K, et al. Brain Res, 2001 Mar 30. PMID 11277976
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables extracellular ligand-gated monoatomic ion channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables neurotransmitter receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transmembrane signaling receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chemical synaptic transmission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in monoatomic ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nervous system process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of membrane potential IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in postsynaptic membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    5-hydroxytryptamine receptor 3B
    Names
    5-hydroxytryptamine (serotonin) receptor 3B, ionotropic
    5-hydroxytryptamine 3 receptor B subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UM_NZW_1.0 Primary Assembly

    Genomic

    1. NC_067374.1 Reference UM_NZW_1.0 Primary Assembly

      Range
      116413081..116473770 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_051849210.1 → XP_051705170.1  5-hydroxytryptamine receptor 3B isoform X3

    2. XM_051849201.1 → XP_051705161.1  5-hydroxytryptamine receptor 3B isoform X3

    3. XM_051849189.1 → XP_051705149.1  5-hydroxytryptamine receptor 3B isoform X1

    4. XM_002708384.4 → XP_002708430.1  5-hydroxytryptamine receptor 3B isoform X2

      UniProtKB/TrEMBL
      U3KML2
      Related
      ENSOCUP00000026471.2
      Conserved Domains (4) summary
      TIGR00860
      Location:1 → 436
      LIC; Cation transporter family protein
      pfam02931
      Location:34 → 240
      Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
      pfam02932
      Location:247 → 318
      Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region
      cl08246
      Location:343 → 421
      MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
    Nucleotide Protein
    Heading Accession and Version

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