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    hhipl1 HHIP-like 1 [ Danio rerio (zebrafish) ]

    Gene ID: 100002738, updated on 12-Sep-2024

    Summary

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    Official Symbol
    hhipl1provided by ZNC
    Official Full Name
    HHIP-like 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-090306-3
    See related
    Ensembl:ENSDARG00000062501 AllianceGenome:ZFIN:ZDB-GENE-090306-3
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable catalytic activity and scavenger receptor activity. Located in cytoplasm. Orthologous to human HHIPL1 (HHIP like 1). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    See hhipl1 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (17939095..17948599, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (17919259..17928751, complement)

    Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene isthmin 2a Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene coiled-coil domain containing 85C, a Neighboring gene SET domain containing 3, actin histidine methyltransferase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. A live zebrafish-based screening system for human nuclear receptor ligand and cofactor discovery. Tiefenbach J, et al. PLoS One, 2010 Mar 22. PMID 20339547, Free PMC Article
    2. Systematic discovery of novel ciliary genes through functional genomics in the zebrafish. Choksi SP, et al. Development, 2014 Sep. PMID 25139857, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    HHIP-like protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001327900.1 → NP_001314829.1  HHIP-like protein 1

      Status: VALIDATED

      Source sequence(s)
      BC134904
      UniProtKB/TrEMBL
      A0A8M1P8G5, A4IG31, F6PEI8
      Related
      ENSDARP00000084880.4, ENSDART00000090447.5
      Conserved Domains (4) summary
      smart00202
      Location:692 → 794
      SR; Scavenger receptor Cys-rich
      pfam00530
      Location:705 → 794
      SRCR; Scavenger receptor cysteine-rich domain
      pfam03024
      Location:34 → 144
      Folate_rec; Folate receptor family
      pfam07995
      Location:205 → 451
      GSDH; Glucose / Sorbosone dehydrogenase

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007128.7 Reference GRCz11 Primary Assembly

      Range
      17939095..17948599 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021467084.2 → XP_021322759.1  HHIP-like protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8M9PE11, A4IG31
      Conserved Domains (3) summary
      smart00202
      Location:689 → 791
      SR; Scavenger receptor Cys-rich
      pfam03024
      Location:34 → 144
      Folate_rec; Folate receptor family
      cl26817
      Location:205 → 451
      GSDH; Glucose / Sorbosone dehydrogenase
    Nucleotide Protein
    Heading Accession and Version

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