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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_029914.1 RefSeqGene
- Range
-
5997..47554
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_004184.4 → NP_004175.2 tryptophan--tRNA ligase, cytoplasmic isoform a
See identical proteins and their annotated locations for NP_004175.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript. Variants 1 and 2 both encode isoform a.
- Source sequence(s)
-
AV710027, BC017489
- Consensus CDS
-
CCDS9960.1
- UniProtKB/Swiss-Prot
- A6NGN1, A6NID3, P23381, P78535, Q502Y0, Q53XB6, Q9UDI5, Q9UDL3
- UniProtKB/TrEMBL
-
A0A024R6K8
- Related
- ENSP00000376620.2, ENST00000392882.7
- Conserved Domains (2) summary
-
- PLN02486
Location:85 → 466
- PLN02486; aminoacyl-tRNA ligase
- cd00936
Location:12 → 61
- WEPRS_RNA; WEPRS_RNA binding domain. This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in multiple copies in eukaryotic bifunctional glutamyl-prolyl-tRNA synthetases (EPRS) in a region that separates ...
-
NM_173701.2 → NP_776049.1 tryptophan--tRNA ligase, cytoplasmic isoform a
See identical proteins and their annotated locations for NP_776049.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 both encode isoform a.
- Source sequence(s)
-
AK056100, BC017489
- Consensus CDS
-
CCDS9960.1
- UniProtKB/Swiss-Prot
- A6NGN1, A6NID3, P23381, P78535, Q502Y0, Q53XB6, Q9UDI5, Q9UDL3
- UniProtKB/TrEMBL
-
A0A024R6K8
- Related
- ENSP00000347495.2, ENST00000355338.6
- Conserved Domains (2) summary
-
- PLN02486
Location:85 → 466
- PLN02486; aminoacyl-tRNA ligase
- cd00936
Location:12 → 61
- WEPRS_RNA; WEPRS_RNA binding domain. This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in multiple copies in eukaryotic bifunctional glutamyl-prolyl-tRNA synthetases (EPRS) in a region that separates ...
-
NM_213645.2 → NP_998810.1 tryptophan--tRNA ligase, cytoplasmic isoform b
See identical proteins and their annotated locations for NP_998810.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks an alternate exon compared to variant 1. The resulting isoform (b) uses a downstream start codon but has the same C-terminus compared to isoform a. Variants 3 and 4 both encode isoform b.
- Source sequence(s)
-
BC017489, BG717903
- Consensus CDS
-
CCDS9961.1
- UniProtKB/Swiss-Prot
-
P23381
- Related
- ENSP00000351481.4, ENST00000358655.8
- Conserved Domains (2) summary
-
- PLN02486
Location:44 → 425
- PLN02486; aminoacyl-tRNA ligase
- cl00349
Location:2 → 23
- S15_NS1_EPRS_RNA-bind; S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic ...
-
NM_213646.2 → NP_998811.1 tryptophan--tRNA ligase, cytoplasmic isoform b
See identical proteins and their annotated locations for NP_998811.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR and coding region compared to variant 1. The resulting isoform (b) uses a downstream start codon but has the same C-terminus compared to isoform a. Variants 3 and 4 both encode isoform b.
- Source sequence(s)
-
BC017489, BM561448
- Consensus CDS
-
CCDS9961.1
- UniProtKB/Swiss-Prot
-
P23381
- Related
- ENSP00000339485.5, ENST00000344102.9
- Conserved Domains (2) summary
-
- PLN02486
Location:44 → 425
- PLN02486; aminoacyl-tRNA ligase
- cl00349
Location:2 → 23
- S15_NS1_EPRS_RNA-bind; S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000014.9 Reference GRCh38.p14 Primary Assembly
- Range
-
100333790..100376327 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_024449707.2 → XP_024305475.1 tryptophan--tRNA ligase, cytoplasmic isoform X1
- UniProtKB/Swiss-Prot
- A6NGN1, A6NID3, P23381, P78535, Q502Y0, Q53XB6, Q9UDI5, Q9UDL3
- UniProtKB/TrEMBL
-
A0A024R6K8
- Conserved Domains (2) summary
-
- PLN02486
Location:85 → 466
- PLN02486; aminoacyl-tRNA ligase
- cd00936
Location:12 → 61
- WEPRS_RNA; WEPRS_RNA binding domain. This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in multiple copies in eukaryotic bifunctional glutamyl-prolyl-tRNA synthetases (EPRS) in a region that separates ...
-
XM_047431762.1 → XP_047287718.1 tryptophan--tRNA ligase, cytoplasmic isoform X1
- UniProtKB/Swiss-Prot
- A6NGN1, A6NID3, P23381, P78535, Q502Y0, Q53XB6, Q9UDI5, Q9UDL3
- UniProtKB/TrEMBL
-
A0A024R6K8
-
XM_047431763.1 → XP_047287719.1 tryptophan--tRNA ligase, cytoplasmic isoform X1
- UniProtKB/Swiss-Prot
- A6NGN1, A6NID3, P23381, P78535, Q502Y0, Q53XB6, Q9UDI5, Q9UDL3
- UniProtKB/TrEMBL
-
A0A024R6K8
-
XM_017021627.3 → XP_016877116.1 tryptophan--tRNA ligase, cytoplasmic isoform X1
- UniProtKB/Swiss-Prot
- A6NGN1, A6NID3, P23381, P78535, Q502Y0, Q53XB6, Q9UDI5, Q9UDL3
- UniProtKB/TrEMBL
-
A0A024R6K8
- Conserved Domains (2) summary
-
- PLN02486
Location:85 → 466
- PLN02486; aminoacyl-tRNA ligase
- cd00936
Location:12 → 61
- WEPRS_RNA; WEPRS_RNA binding domain. This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in multiple copies in eukaryotic bifunctional glutamyl-prolyl-tRNA synthetases (EPRS) in a region that separates ...
-
XM_047431759.1 → XP_047287715.1 tryptophan--tRNA ligase, cytoplasmic isoform X1
- UniProtKB/Swiss-Prot
- A6NGN1, A6NID3, P23381, P78535, Q502Y0, Q53XB6, Q9UDI5, Q9UDL3
- UniProtKB/TrEMBL
-
A0A024R6K8
-
XM_047431758.1 → XP_047287714.1 tryptophan--tRNA ligase, cytoplasmic isoform X1
- UniProtKB/Swiss-Prot
- A6NGN1, A6NID3, P23381, P78535, Q502Y0, Q53XB6, Q9UDI5, Q9UDL3
- UniProtKB/TrEMBL
-
A0A024R6K8
-
XM_047431757.1 → XP_047287713.1 tryptophan--tRNA ligase, cytoplasmic isoform X1
- UniProtKB/Swiss-Prot
- A6NGN1, A6NID3, P23381, P78535, Q502Y0, Q53XB6, Q9UDI5, Q9UDL3
- UniProtKB/TrEMBL
-
A0A024R6K8
-
XM_047431765.1 → XP_047287721.1 tryptophan--tRNA ligase, cytoplasmic isoform X2
-
XM_047431764.1 → XP_047287720.1 tryptophan--tRNA ligase, cytoplasmic isoform X1
- UniProtKB/Swiss-Prot
- A6NGN1, A6NID3, P23381, P78535, Q502Y0, Q53XB6, Q9UDI5, Q9UDL3
- UniProtKB/TrEMBL
-
A0A024R6K8
-
XM_011537136.4 → XP_011535438.1 tryptophan--tRNA ligase, cytoplasmic isoform X3
See identical proteins and their annotated locations for XP_011535438.1
- UniProtKB/Swiss-Prot
-
P23381
- Conserved Domains (2) summary
-
- PLN02486
Location:44 → 425
- PLN02486; aminoacyl-tRNA ligase
- cl00349
Location:2 → 23
- S15_NS1_EPRS_RNA-bind; S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic ...
-
XM_047431760.1 → XP_047287716.1 tryptophan--tRNA ligase, cytoplasmic isoform X1
- UniProtKB/Swiss-Prot
- A6NGN1, A6NID3, P23381, P78535, Q502Y0, Q53XB6, Q9UDI5, Q9UDL3
- UniProtKB/TrEMBL
-
A0A024R6K8
-
XM_047431761.1 → XP_047287717.1 tryptophan--tRNA ligase, cytoplasmic isoform X1
- UniProtKB/Swiss-Prot
- A6NGN1, A6NID3, P23381, P78535, Q502Y0, Q53XB6, Q9UDI5, Q9UDL3
- UniProtKB/TrEMBL
-
A0A024R6K8
- Related
- ENSP00000451460.1, ENST00000557135.5
Alternate T2T-CHM13v2.0
Genomic
-
NC_060938.1 Alternate T2T-CHM13v2.0
- Range
-
94566811..94609425 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054376700.1 → XP_054232675.1 tryptophan--tRNA ligase, cytoplasmic isoform X1
- UniProtKB/Swiss-Prot
- A6NGN1, A6NID3, P23381, P78535, Q502Y0, Q53XB6, Q9UDI5, Q9UDL3
- UniProtKB/TrEMBL
-
A0A024R6K8
-
XM_054376703.1 → XP_054232678.1 tryptophan--tRNA ligase, cytoplasmic isoform X1
- UniProtKB/Swiss-Prot
- A6NGN1, A6NID3, P23381, P78535, Q502Y0, Q53XB6, Q9UDI5, Q9UDL3
- UniProtKB/TrEMBL
-
A0A024R6K8
-
XM_054376704.1 → XP_054232679.1 tryptophan--tRNA ligase, cytoplasmic isoform X1
- UniProtKB/Swiss-Prot
- A6NGN1, A6NID3, P23381, P78535, Q502Y0, Q53XB6, Q9UDI5, Q9UDL3
- UniProtKB/TrEMBL
-
A0A024R6K8
-
XM_054376696.1 → XP_054232671.1 tryptophan--tRNA ligase, cytoplasmic isoform X1
- UniProtKB/Swiss-Prot
- A6NGN1, A6NID3, P23381, P78535, Q502Y0, Q53XB6, Q9UDI5, Q9UDL3
- UniProtKB/TrEMBL
-
A0A024R6K8
-
XM_054376699.1 → XP_054232674.1 tryptophan--tRNA ligase, cytoplasmic isoform X1
- UniProtKB/Swiss-Prot
- A6NGN1, A6NID3, P23381, P78535, Q502Y0, Q53XB6, Q9UDI5, Q9UDL3
- UniProtKB/TrEMBL
-
A0A024R6K8
-
XM_054376698.1 → XP_054232673.1 tryptophan--tRNA ligase, cytoplasmic isoform X1
- UniProtKB/Swiss-Prot
- A6NGN1, A6NID3, P23381, P78535, Q502Y0, Q53XB6, Q9UDI5, Q9UDL3
- UniProtKB/TrEMBL
-
A0A024R6K8
-
XM_054376697.1 → XP_054232672.1 tryptophan--tRNA ligase, cytoplasmic isoform X1
- UniProtKB/Swiss-Prot
- A6NGN1, A6NID3, P23381, P78535, Q502Y0, Q53XB6, Q9UDI5, Q9UDL3
- UniProtKB/TrEMBL
-
A0A024R6K8
-
XM_054376705.1 → XP_054232680.1 tryptophan--tRNA ligase, cytoplasmic isoform X3
-
XM_054376701.1 → XP_054232676.1 tryptophan--tRNA ligase, cytoplasmic isoform X1
- UniProtKB/Swiss-Prot
- A6NGN1, A6NID3, P23381, P78535, Q502Y0, Q53XB6, Q9UDI5, Q9UDL3
- UniProtKB/TrEMBL
-
A0A024R6K8
-
XM_054376702.1 → XP_054232677.1 tryptophan--tRNA ligase, cytoplasmic isoform X1
- UniProtKB/Swiss-Prot
- A6NGN1, A6NID3, P23381, P78535, Q502Y0, Q53XB6, Q9UDI5, Q9UDL3
- UniProtKB/TrEMBL
-
A0A024R6K8