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    LOC7461640 serine hydroxymethyltransferase 4 [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7461640, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC7461640
    Gene description
    serine hydroxymethyltransferase 4
    Locus tag
    POPTR_001G320400v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
    Also known as
    SHMT1
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    Genomic context

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    See LOC7461640 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 1 NC_037285.2 (33012800..33015974, complement)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 1 NC_037285.1 (32510350..32513366, complement)

    Chromosome 1 - NC_037285.2Genomic Context describing neighboring genes Neighboring gene UDP-glucuronate 4-epimerase 6 Neighboring gene 3'-5' exonuclease-like Neighboring gene DNA repair protein RAD50 Neighboring gene adenosylhomocysteinase Neighboring gene uncharacterized LOC112326485

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. Ralph SG, et al. BMC Genomics, 2008 Jan 29. PMID 18230180, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cobalt ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables glycine hydroxymethyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables serine binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-serine catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in folic acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glycine biosynthetic process from serine IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tetrahydrofolate interconversion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine hydroxymethyltransferase 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037285.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      33012800..33015974 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002298642.4 → XP_002298678.3  serine hydroxymethyltransferase 4

      UniProtKB/TrEMBL
      A9P855, A9PCX3
      Conserved Domains (1) summary
      PLN03226
      Location:1 → 471
      PLN03226; serine hydroxymethyltransferase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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