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    LOC7493466 caffeic acid 3-O-methyltransferase 1 [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7493466, updated on 25-Apr-2024

    Summary

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    Gene symbol
    LOC7493466
    Gene description
    caffeic acid 3-O-methyltransferase 1
    Locus tag
    POPTR_012G006400v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
    Also known as
    COMT1; COMT2
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    Genomic context

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    See LOC7493466 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 12 NC_037296.2 (254984..258265, complement)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 12 NC_037296.1 (555461..558552, complement)

    Chromosome 12 - NC_037296.2Genomic Context describing neighboring genes Neighboring gene fasciclin-like arabinogalactan protein 17 Neighboring gene protein DOWNY MILDEW RESISTANCE 6 Neighboring gene RPM1 interacting protein 13 Neighboring gene nascent polypeptide-associated complex subunit alpha-like protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Engineering monolignol 4-O-methyltransferases to modulate lignin biosynthesis. Bhuiya MW, et al. J Biol Chem, 2010 Jan 1. PMID 19875443, Free PMC Article
    2. Towards a systems approach for lignin biosynthesis in Populus trichocarpa: transcript abundance and specificity of the monolignol biosynthetic genes. Shi R, et al. Plant Cell Physiol, 2010 Jan. PMID 19996151
    3. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. Ralph SG, et al. BMC Genomics, 2008 Jan 29. PMID 18230180, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables O-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables S-adenosylmethionine-dependent methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    caffeic acid 3-O-methyltransferase 1
    Names
    caffeate O-methyltransferase
    caffeic acid 5-hydroxyferulic acid 35-O-methyltransferase ferulic acid complex chain A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037296.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      254984..258265 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002317802.4 → XP_002317838.1  caffeic acid 3-O-methyltransferase 1

      See identical proteins and their annotated locations for XP_002317838.1

      UniProtKB/TrEMBL
      A9P830, C6FFB6
      Conserved Domains (2) summary
      pfam00891
      Location:129 → 349
      Methyltransf_2; O-methyltransferase
      pfam08100
      Location:34 → 85
      Dimerisation; Dimerisation domain
    Nucleotide Protein
    Heading Accession and Version

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