U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    LOC100283677 uncharacterized LOC100283677 [ Zea mays ]

    Gene ID: 100283677, updated on 11-Apr-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC100283677
    Gene description
    uncharacterized LOC100283677
    Locus tag
    ZEAMMB73_Zm00001d052444
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    cl173_1a; GRMZM2G095141
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 4 NC_050099.1 (192080187..192083256)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 4 NC_024462.2 (190133620..190136392)

    Chromosome 4 - NC_050099.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103655791 Neighboring gene ADP-ribosylation factor Neighboring gene proteasome adapter and scaffold protein ECM29 Neighboring gene tryptamine hydroxycinnamoyltransferase 1 Neighboring gene pentatricopeptide repeat-containing protein At1g52620

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing. Vega-Arreguín JC, et al. BMC Genomics, 2009 Jul 6. PMID 19580677, Free PMC Article
    2. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
    3. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
    4. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    5. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydroxymethylglutaryl-CoA lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-leucine catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ketone body biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    Hydroxymethylglutaryl-CoA lyase, mitochondrial; uncharacterized protein LOC100283677
    Names
    Hydroxymethylglutaryl-CoA lyase mitochondrial
    cl173_1(336)

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001156578.2 → NP_001150050.1  Hydroxymethylglutaryl-CoA lyase, mitochondrial

      See identical proteins and their annotated locations for NP_001150050.1

      Status: PROVISIONAL

      Source sequence(s)
      EU965510
      UniProtKB/TrEMBL
      B6TKJ5, B7ZYL9
      Conserved Domains (2) summary
      PLN02746
      Location:51 → 393
      PLN02746; hydroxymethylglutaryl-CoA lyase
      pfam00682
      Location:100 → 373
      HMGL-like; HMGL-like

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050099.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      192080187..192083256
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008679081.3 → XP_008677303.1  uncharacterized protein LOC100283677 isoform X1

      See identical proteins and their annotated locations for XP_008677303.1

      UniProtKB/TrEMBL
      A0A804NYS0, B7ZYL9
      Conserved Domains (2) summary
      PLN02746
      Location:51 → 398
      PLN02746; hydroxymethylglutaryl-CoA lyase
      pfam00682
      Location:100 → 378
      HMGL-like; HMGL-like
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases