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    ZDHHC8BP ZDHHC8B, pseudogene [ Homo sapiens (human) ]

    Gene ID: 150244, updated on 17-Sep-2024

    Summary

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    Official Symbol
    ZDHHC8BPprovided by HGNC
    Official Full Name
    ZDHHC8B, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:26461
    See related
    Ensembl:ENSG00000290920 AllianceGenome:HGNC:26461
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ZDHHC8P; ZDHHC8P1
    Expression
    Biased expression in prostate (RPKM 14.9), ovary (RPKM 11.3) and 3 other tissues See more
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    Genomic context

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    See ZDHHC8BP in Genome Data Viewer
    Location:
    22q11.23
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (23390605..23402612, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (23813358..23825364, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (23732792..23744799, complement)

    Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2556 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr22:23709276-23710010 Neighboring gene carboxylesterase 5A pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23728238-23729220 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23730785-23731642 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23735088-23735588 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23741087-23741641 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23741731-23742504 Neighboring gene coiled-coil domain containing 188B, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23758527-23759161 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr22:23773427-23774272 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23777839-23778530 Neighboring gene long intergenic non-protein coding RNA 1659 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23792825-23793326 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23793873-23794519 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:23802568-23803102 Neighboring gene family with sequence similarity 230 member I

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. LncRNA-ZDHHC8P1 promotes the progression and metastasis of colorectal cancer by targeting miR-34a. Li C, et al. Eur Rev Med Pharmacol Sci, 2019 Feb. PMID 30840269
    2. Generation and analysis of 280,000 human expressed sequence tags. Hillier LD, et al. Genome Res, 1996 Sep. PMID 8889549
    3. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. Brandenberger R, et al. Nat Biotechnol, 2004 Jun. PMID 15146197
    4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    5. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Knockdown of ZDHHC8P1 decrease the proliferation ability in both cell lines and decreased the expression of cyclin D1.
      Title: LncRNA-ZDHHC8P1 promotes the progression and metastasis of colorectal cancer by targeting miR-34a.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Other Names

    • ZDHHC8 pseudogene 1
    • zinc finger DHHC-type containing 8 pseudogene 1
    • zinc finger, DHHC-type containing 8 pseudogene

    Clone Names

    • FLJ31568, MGC126046, MGC126047

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_003950.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AA126252, AK056130, AP000344, CK902416, CN269046, DA485168
      Related
      ENST00000692963.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

      Range
      23390605..23402612 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NT_187632.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      36563..48570 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060946.1 Alternate T2T-CHM13v2.0

      Range
      23813358..23825364 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_152509.1: Suppressed sequence

      Description
      NM_152509.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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