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    PLUT PDX1 associated lncRNA, upregulator of transcription [ Homo sapiens (human) ]

    Gene ID: 100861550, updated on 17-Sep-2024

    Summary

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    Official Symbol
    PLUTprovided by HGNC
    Official Full Name
    PDX1 associated lncRNA, upregulator of transcriptionprovided by HGNC
    Primary source
    HGNC:HGNC:43698
    See related
    AllianceGenome:HGNC:43698
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    PLUTO; HI-LNC71; PDX1-AS1
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See PLUT in Genome Data Viewer
    Location:
    13q12.2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (27819092..27917291, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (27040207..27138419, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (28393229..28491428, complement)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370129 Neighboring gene VISTA enhancer hs1568 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7509 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:28366547-28367350 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:28368959-28369761 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:28371161-28371843 Neighboring gene GS homeobox 1 Neighboring gene VISTA enhancer hs532 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:28401001-28401500 Neighboring gene uncharacterized LOC124903139 Neighboring gene RNA, U6 small nuclear 73, pseudogene Neighboring gene uncharacterized LOC105370130 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:28497939-28498606 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:28498607-28499273 Neighboring gene pancreatic and duodenal homeobox 1 Neighboring gene ATP synthase F1 subunit epsilon pseudogene 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.
    EBI GWAS Catalog
    Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.
    EBI GWAS Catalog
    Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer.
    EBI GWAS Catalog

    Variation

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    See Variation Viewer (GRCh37.p13)

    General gene information

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    Other Names

    • Human Islet Long Non Coding RNA 71
    • PDX1 antisense RNA 1 (non-protein coding)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_047484.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL353195, AL390738

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      27819092..27917291 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      27040207..27138419 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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    Research Materials